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Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.
Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK Jr, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E. Eisen JA, et al. Among authors: cherry jm. PLoS Biol. 2006 Sep;4(9):e286. doi: 10.1371/journal.pbio.0040286. PLoS Biol. 2006. PMID: 16933976 Free PMC article.
The genome sequence of Drosophila melanogaster.
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravi… See abstract for full author list ➔ Adams MD, et al. Among authors: cherry jm. Science. 2000 Mar 24;287(5461):2185-95. doi: 10.1126/science.287.5461.2185. Science. 2000. PMID: 10731132
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
Hitz BC, Rowe LD, Podduturi NR, Glick DI, Baymuradov UK, Malladi VS, Chan ET, Davidson JM, Gabdank I, Narayana AK, Onate KC, Hilton J, Ho MC, Lee BT, Miyasato SR, Dreszer TR, Sloan CA, Strattan JS, Tanaka FY, Hong EL, Cherry JM. Hitz BC, et al. Among authors: cherry jm. PLoS One. 2017 Apr 12;12(4):e0175310. doi: 10.1371/journal.pone.0175310. eCollection 2017. PLoS One. 2017. PMID: 28403240 Free PMC article.
Saccharomyces Genome Database provides mutant phenotype data.
Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry JM. Engel SR, et al. Among authors: cherry jm. Nucleic Acids Res. 2010 Jan;38(Database issue):D433-6. doi: 10.1093/nar/gkp917. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906697 Free PMC article.
Saccharomyces Genome Database: the genomics resource of budding yeast.
Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Simison M, Weng S, Wong ED. Cherry JM, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D700-5. doi: 10.1093/nar/gkr1029. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110037 Free PMC article.
InterMOD: integrated data and tools for the unification of model organism research.
Sullivan J, Karra K, Moxon SA, Vallejos A, Motenko H, Wong JD, Aleksic J, Balakrishnan R, Binkley G, Harris T, Hitz B, Jayaraman P, Lyne R, Neuhauser S, Pich C, Smith RN, Trinh Q, Cherry JM, Richardson J, Stein L, Twigger S, Westerfield M, Worthey E, Micklem G. Sullivan J, et al. Among authors: cherry jm. Sci Rep. 2013;3:1802. doi: 10.1038/srep01802. Sci Rep. 2013. PMID: 23652793 Free PMC article.
Gene Ontology annotations at SGD: new data sources and annotation methods.
Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM. Hong EL, et al. Among authors: cherry jm. Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. doi: 10.1093/nar/gkm909. Epub 2007 Nov 3. Nucleic Acids Res. 2008. PMID: 17982175 Free PMC article.
Arabidopsis thaliana: a model plant for genome analysis.
Meinke DW, Cherry JM, Dean C, Rounsley SD, Koornneef M. Meinke DW, et al. Among authors: cherry jm. Science. 1998 Oct 23;282(5389):662, 679-82. doi: 10.1126/science.282.5389.662. Science. 1998. PMID: 9784120 Review.
158 results