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Comparative phylogenomics and phylotranscriptomics provide insights into the genetic complexity of nitrogen-fixing root-nodule symbiosis.
Zhang Y, Fu Y, Xian W, Li X, Feng Y, Bu F, Shi Y, Chen S, van Velzen R, Battenberg K, Berry AM, Salgado MG, Liu H, Yi T, Fournier P, Alloisio N, Pujic P, Boubakri H, Schranz ME, Delaux PM, Wong GK, Hocher V, Svistoonoff S, Gherbi H, Wang E, Kohlen W, Wall LG, Parniske M, Pawlowski K, Normand P, Doyle JJ, Cheng S. Zhang Y, et al. Among authors: cheng s. Plant Commun. 2024 Jan 8;5(1):100671. doi: 10.1016/j.xplc.2023.100671. Epub 2023 Aug 8. Plant Commun. 2024. PMID: 37553834 Free PMC article.
Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.
Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, Liang Y, Hilhorst H, Salgado MG, Hocher V, Gherbi H, Svistoonoff S, Doyle JJ, He S, Xu Y, Xu S, Qu J, Gao Q, Fang X, Fu Y, Normand P, Berry AM, Wall LG, Ané JM, Pawlowski K, Xu X, Yang H, Spannagl M, Mayer KFX, Wong GK, Parniske M, Delaux PM, Cheng S. Griesmann M, et al. Among authors: cheng s. Science. 2018 Jul 13;361(6398):eaat1743. doi: 10.1126/science.aat1743. Epub 2018 May 24. Science. 2018. PMID: 29794220
Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution.
Cheng S, Xian W, Fu Y, Marin B, Keller J, Wu T, Sun W, Li X, Xu Y, Zhang Y, Wittek S, Reder T, Günther G, Gontcharov A, Wang S, Li L, Liu X, Wang J, Yang H, Xu X, Delaux PM, Melkonian B, Wong GK, Melkonian M. Cheng S, et al. Cell. 2019 Nov 14;179(5):1057-1067.e14. doi: 10.1016/j.cell.2019.10.019. Cell. 2019. PMID: 31730849 Free article.
10KP: A phylodiverse genome sequencing plan.
Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, Liu X, Xu X, Wong GK. Cheng S, et al. Gigascience. 2018 Mar 1;7(3):1-9. doi: 10.1093/gigascience/giy013. Gigascience. 2018. PMID: 29618049 Free PMC article.
The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers.
Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Bräutigam A, Weber AP, Shi C, Zheng Z, Li W, Lv M, Tao Y, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, Schranz ME. Cheng S, et al. Plant Cell. 2013 Aug;25(8):2813-30. doi: 10.1105/tpc.113.113480. Epub 2013 Aug 27. Plant Cell. 2013. PMID: 23983221 Free PMC article.
An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages.
Radhakrishnan GV, Keller J, Rich MK, Vernié T, Mbadinga Mbadinga DL, Vigneron N, Cottret L, Clemente HS, Libourel C, Cheema J, Linde AM, Eklund DM, Cheng S, Wong GKS, Lagercrantz U, Li FW, Oldroyd GED, Delaux PM. Radhakrishnan GV, et al. Among authors: cheng s. Nat Plants. 2020 Mar;6(3):280-289. doi: 10.1038/s41477-020-0613-7. Epub 2020 Mar 2. Nat Plants. 2020. PMID: 32123350
Genomes of early-diverging streptophyte algae shed light on plant terrestrialization.
Wang S, Li L, Li H, Sahu SK, Wang H, Xu Y, Xian W, Song B, Liang H, Cheng S, Chang Y, Song Y, Çebi Z, Wittek S, Reder T, Peterson M, Yang H, Wang J, Melkonian B, Van de Peer Y, Xu X, Wong GK, Melkonian M, Liu H, Liu X. Wang S, et al. Among authors: cheng s. Nat Plants. 2020 Feb;6(2):95-106. doi: 10.1038/s41477-019-0560-3. Epub 2019 Dec 16. Nat Plants. 2020. PMID: 31844283 Free PMC article.
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts.
Li FW, Nishiyama T, Waller M, Frangedakis E, Keller J, Li Z, Fernandez-Pozo N, Barker MS, Bennett T, Blázquez MA, Cheng S, Cuming AC, de Vries J, de Vries S, Delaux PM, Diop IS, Harrison CJ, Hauser D, Hernández-García J, Kirbis A, Meeks JC, Monte I, Mutte SK, Neubauer A, Quandt D, Robison T, Shimamura M, Rensing SA, Villarreal JC, Weijers D, Wicke S, Wong GK, Sakakibara K, Szövényi P. Li FW, et al. Among authors: cheng s. Nat Plants. 2020 Mar;6(3):259-272. doi: 10.1038/s41477-020-0618-2. Epub 2020 Mar 13. Nat Plants. 2020. PMID: 32170292 Free PMC article.
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