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436 results

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Page 1
A single-cell genomics pipeline for environmental microbial eukaryotes.
Ciobanu D, Clum A, Ahrendt S, Andreopoulos WB, Salamov A, Chan S, Quandt CA, Foster B, Meier-Kolthoff JP, Tang YT, Schwientek P, Benny GL, Smith ME, Bauer D, Deshpande S, Barry K, Copeland A, Singer SW, Woyke T, Grigoriev IV, James TY, Cheng JF. Ciobanu D, et al. Among authors: cheng jf. iScience. 2021 Mar 10;24(4):102290. doi: 10.1016/j.isci.2021.102290. eCollection 2021 Apr 23. iScience. 2021. PMID: 33870123 Free PMC article.
Assembling the marine metagenome, one cell at a time.
Woyke T, Xie G, Copeland A, González JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R. Woyke T, et al. Among authors: cheng jf. PLoS One. 2009;4(4):e5299. doi: 10.1371/journal.pone.0005299. Epub 2009 Apr 23. PLoS One. 2009. PMID: 19390573 Free PMC article.
One bacterial cell, one complete genome.
Woyke T, Tighe D, Mavromatis K, Clum A, Copeland A, Schackwitz W, Lapidus A, Wu D, McCutcheon JP, McDonald BR, Moran NA, Bristow J, Cheng JF. Woyke T, et al. Among authors: cheng jf. PLoS One. 2010 Apr 23;5(4):e10314. doi: 10.1371/journal.pone.0010314. PLoS One. 2010. PMID: 20428247 Free PMC article.
The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments.
Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Chen F, Nolan M, Saunders E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Lykidis A, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Goodwin L, Detter JC, Brettin T, Rohde M, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Spring S, et al. Among authors: cheng jf. Archaea. 2010 Dec 23;2010:690737. doi: 10.1155/2010/690737. Archaea. 2010. PMID: 21234345 Free PMC article.
Decontamination of MDA reagents for single cell whole genome amplification.
Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng JF. Woyke T, et al. Among authors: cheng jf. PLoS One. 2011;6(10):e26161. doi: 10.1371/journal.pone.0026161. Epub 2011 Oct 20. PLoS One. 2011. PMID: 22028825 Free PMC article.
Generation of long insert pairs using a Cre-LoxP Inverse PCR approach.
Peng Z, Zhao Z, Nath N, Froula JL, Clum A, Zhang T, Cheng JF, Copeland AC, Pennacchio LA, Chen F. Peng Z, et al. Among authors: cheng jf. PLoS One. 2012;7(1):e29437. doi: 10.1371/journal.pone.0029437. Epub 2012 Jan 9. PLoS One. 2012. PMID: 22253722 Free PMC article.
Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).
Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Palaniappan K, Land M, Pan C, Rohde M, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Mavromatis K. Anderson I, et al. Among authors: cheng jf. Stand Genomic Sci. 2012 Jul 30;6(3):1-13. doi: 10.4056/sigs.2736042. Epub 2012 Jul 20. Stand Genomic Sci. 2012. PMID: 23407703 Free PMC article.
Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL(T)).
Spring S, Visser M, Lu M, Copeland A, Lapidus A, Lucas S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Ivanova N, Land M, Hauser L, Larimer F, Rohde M, Göker M, Detter JC, Kyrpides NC, Woyke T, Schaap PJ, Plugge CM, Muyzer G, Kuever J, Pereira IA, Parshina SN, Bernier-Latmani R, Stams AJ, Klenk HP. Spring S, et al. Among authors: cheng jf. Stand Genomic Sci. 2012 Dec 19;7(2):304-19. doi: 10.4056/sigs.3226659. Epub 2012 Dec 11. Stand Genomic Sci. 2012. PMID: 23408247 Free PMC article.
Insights into the phylogeny and coding potential of microbial dark matter.
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T. Rinke C, et al. Among authors: cheng jf. Nature. 2013 Jul 25;499(7459):431-7. doi: 10.1038/nature12352. Epub 2013 Jul 14. Nature. 2013. PMID: 23851394 Free article.
Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).
Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Chang YJ, Land M, Hauser L, Rohde M, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Stackebrandt E, et al. Among authors: cheng jf. Stand Genomic Sci. 2013 Apr 15;8(1):15-25. doi: 10.4056/sigs.3507020. eCollection 2013 Apr 15. Stand Genomic Sci. 2013. PMID: 23961308 Free PMC article.
436 results