Chen KT - Search Results

1

iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2.

Yang CH, Shih CT, Chen KT, Lee PH, Tsai PH, Lin JC, Yen CY, Lin TY, Lu CL. Yang CH, et al. Among authors: chen kt. Nucleic Acids Res. 2016 Jul 8;44(W1):W328-32. doi: 10.1093/nar/gkw412. Epub 2016 May 16. Nucleic Acids Res. 2016. PMID: 27185896 Free PMC article.

2

FASTR3D: a fast and accurate search tool for similar RNA 3D structures.

Lai CE, Tsai MY, Liu YC, Wang CW, Chen KT, Lu CL. Lai CE, et al. Among authors: chen kt. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W287-95. doi: 10.1093/nar/gkp330. Epub 2009 May 12. Nucleic Acids Res. 2009. PMID: 19435878 Free PMC article.

3

iPARTS: an improved tool of pairwise alignment of RNA tertiary structures.

Wang CW, Chen KT, Lu CL. Wang CW, et al. Among authors: chen kt. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W340-7. doi: 10.1093/nar/gkq483. Epub 2010 May 27. Nucleic Acids Res. 2010. PMID: 20507908 Free PMC article.

4

R3D-BLAST: a search tool for similar RNA 3D substructures.

Liu YC, Yang CH, Chen KT, Wang JR, Cheng ML, Chung JC, Chiu HT, Lu CL. Liu YC, et al. Among authors: chen kt. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W45-9. doi: 10.1093/nar/gkr379. Epub 2011 May 29. Nucleic Acids Res. 2011. PMID: 21624889 Free PMC article.

5

R3D-BLAST2: an improved search tool for similar RNA 3D substructures.

Yen CY, Lin JC, Chen KT, Lu CL. Yen CY, et al. Among authors: chen kt. BMC Bioinformatics. 2017 Dec 28;18(Suppl 16):574. doi: 10.1186/s12859-017-1956-6. BMC Bioinformatics. 2017. PMID: 29297283 Free PMC article.

6

CSAR-web: a web server of contig scaffolding using algebraic rearrangements.

Chen KT, Lu CL. Chen KT, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W55-W59. doi: 10.1093/nar/gky337. Nucleic Acids Res. 2018. PMID: 29733393 Free PMC article.

7

Assembling contigs in draft genomes using reversals and block-interchanges.

Li CL, Chen KT, Lu CL. Li CL, et al. Among authors: chen kt. BMC Bioinformatics. 2013;14 Suppl 5(Suppl 5):S9. doi: 10.1186/1471-2105-14-S5-S9. Epub 2013 Apr 10. BMC Bioinformatics. 2013. PMID: 23734866 Free PMC article.

8

CAR: contig assembly of prokaryotic draft genomes using rearrangements.

Lu CL, Chen KT, Huang SY, Chiu HT. Lu CL, et al. Among authors: chen kt. BMC Bioinformatics. 2014 Nov 28;15(1):381. doi: 10.1186/s12859-014-0381-3. BMC Bioinformatics. 2014. PMID: 25431302 Free PMC article.

9

Multi-CAR: a tool of contig scaffolding using multiple references.

Chen KT, Chen CJ, Shen HT, Liu CL, Huang SH, Lu CL. Chen KT, et al. Among authors: chen cj. BMC Bioinformatics. 2016 Dec 23;17(Suppl 17):469. doi: 10.1186/s12859-016-1328-7. BMC Bioinformatics. 2016. PMID: 28155633 Free PMC article.

10

CSAR: a contig scaffolding tool using algebraic rearrangements.

Chen KT, Liu CL, Huang SH, Shen HT, Shieh YK, Chiu HT, Lu CL. Chen KT, et al. Bioinformatics. 2018 Jan 1;34(1):109-111. doi: 10.1093/bioinformatics/btx543. Bioinformatics. 2018. PMID: 28968788

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