Chen J - Search Results

1

Unsupervised spatially embedded deep representation of spatial transcriptomics.

Xu H, Fu H, Long Y, Ang KS, Sethi R, Chong K, Li M, Uddamvathanak R, Lee HK, Ling J, Chen A, Shao L, Liu L, Chen J. Xu H, et al. Among authors: chen j, chen a. Genome Med. 2024 Jan 12;16(1):12. doi: 10.1186/s13073-024-01283-x. Genome Med. 2024. PMID: 38217035 Free PMC article.

2

A benchmark of batch-effect correction methods for single-cell RNA sequencing data.

Tran HTN, Ang KS, Chevrier M, Zhang X, Lee NYS, Goh M, Chen J. Tran HTN, et al. Among authors: chen j. Genome Biol. 2020 Jan 16;21(1):12. doi: 10.1186/s13059-019-1850-9. Genome Biol. 2020. PMID: 31948481 Free PMC article.

3

DISCO: a database of Deeply Integrated human Single-Cell Omics data.

Li M, Zhang X, Ang KS, Ling J, Sethi R, Lee NYS, Ginhoux F, Chen J. Li M, et al. Among authors: chen j. Nucleic Acids Res. 2022 Jan 7;50(D1):D596-D602. doi: 10.1093/nar/gkab1020. Nucleic Acids Res. 2022. PMID: 34791375 Free PMC article.

4

Pre-training graph neural networks for link prediction in biomedical networks.

Long Y, Wu M, Liu Y, Fang Y, Kwoh CK, Chen J, Luo J, Li X. Long Y, et al. Among authors: chen j. Bioinformatics. 2022 Apr 12;38(8):2254-2262. doi: 10.1093/bioinformatics/btac100. Bioinformatics. 2022. PMID: 35171981

5

Notch-dependent cooperativity between myeloid lineages promotes Langerhans cell histiocytosis pathology.

Kvedaraite E, Milne P, Khalilnezhad A, Chevrier M, Sethi R, Lee HK, Hagey DW, von Bahr Greenwood T, Mouratidou N, Jädersten M, Lee NYS, Minnerup L, Tan Y, Dutertre CA, Benac N, Hwang YY, Lum J, Loh AHP, Jansson J, Teng KWW, Khalilnezhad S, Xu W, Resteu A, Tey HL, Guan NL, Larbi A, Howland SW, Arnell H, Andaloussi SEL, Braier J, Rassidakis G, Galluzzo L, Dzionek A, Henter JI, Chen J, Collin M, Ginhoux F. Kvedaraite E, et al. Among authors: chen j. Sci Immunol. 2022 Dec 23;7(78):eadd3330. doi: 10.1126/sciimmunol.add3330. Epub 2022 Dec 16. Sci Immunol. 2022. PMID: 36525505 Free PMC article.

6

CD8+ T Cells Trigger Auricular Dermatitis and Blepharitis in Mice after Zika Virus Infection in the Absence of CD4+ T Cells.

Lee CY, Carissimo G, Teo TH, Tong SJM, Chang ZW, Rajarethinam R, Chua TK, Chen Z, Chee RS, Tay A, Howland SW, Ang KS, Chen J, Renia L, Ng LFP. Lee CY, et al. Among authors: chen z, chen j. J Invest Dermatol. 2023 Jun;143(6):1031-1041.e8. doi: 10.1016/j.jid.2022.11.020. Epub 2022 Dec 23. J Invest Dermatol. 2023. PMID: 36566875 Free article.

7

Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST.

Long Y, Ang KS, Li M, Chong KLK, Sethi R, Zhong C, Xu H, Ong Z, Sachaphibulkij K, Chen A, Zeng L, Fu H, Wu M, Lim LHK, Liu L, Chen J. Long Y, et al. Among authors: chen j, chen a. Nat Commun. 2023 Mar 1;14(1):1155. doi: 10.1038/s41467-023-36796-3. Nat Commun. 2023. PMID: 36859400 Free PMC article.

8

Establishing a human bone marrow single cell reference atlas to study ageing and diseases.

Lee NYS, Li M, Ang KS, Chen J. Lee NYS, et al. Among authors: chen j. Front Immunol. 2023 Mar 15;14:1127879. doi: 10.3389/fimmu.2023.1127879. eCollection 2023. Front Immunol. 2023. PMID: 37006302 Free PMC article.

9

Late inflammatory monocytes define circulatory immune dysregulation observed in skin microbiome-stratified atopic dermatitis.

Chua C, Sethi R, Ong J, Low JH, Yew YW, Tay A, Howland SW, Ginhoux F, Chen J, Common JEA, Andiappan AK. Chua C, et al. Among authors: chen j. J Dermatol Sci. 2023 Dec;112(3):158-161. doi: 10.1016/j.jdermsci.2023.10.006. Epub 2023 Nov 3. J Dermatol Sci. 2023. PMID: 37989666 No abstract available.

10

CD27^hiCD38^hi plasmablasts are activated B cells of mixed origin with distinct function.

Rouers A, Appanna R, Chevrier M, Lum J, Lau MC, Tan L, Loy T, Tay A, Sethi R, Sathiakumar D, Kaur K, Böhme J, Leo YS, Renia L, Howland SW, Singhal A, Chen J, Fink K. Rouers A, et al. Among authors: chen j. iScience. 2021 Apr 29;24(5):102482. doi: 10.1016/j.isci.2021.102482. eCollection 2021 May 21. iScience. 2021. PMID: 34113823 Free PMC article.

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