Chen CY - Search Results

1

Phylogenomic analyses provide insights into primate evolution.

Shao Y, Zhou L, Li F, Zhao L, Zhang BL, Shao F, Chen JW, Chen CY, Bi X, Zhuang XL, Zhu HL, Hu J, Sun Z, Li X, Wang D, Rivas-González I, Wang S, Wang YM, Chen W, Li G, Lu HM, Liu Y, Kuderna LFK, Farh KK, Fan PF, Yu L, Li M, Liu ZJ, Tiley GP, Yoder AD, Roos C, Hayakawa T, Marques-Bonet T, Rogers J, Stenson PD, Cooper DN, Schierup MH, Yao YG, Zhang YP, Wang W, Qi XG, Zhang G, Wu DD. Shao Y, et al. Among authors: chen cy, chen jw, chen w. Science. 2023 Jun 2;380(6648):913-924. doi: 10.1126/science.abn6919. Epub 2023 Jun 1. Science. 2023. PMID: 37262173 Free article.

2

Integrative analyses of RNA editing, alternative splicing, and expression of young genes in human brain transcriptome by deep RNA sequencing.

Wu DD, Ye LQ, Li Y, Sun YB, Shao Y, Chen C, Zhu Z, Zhong L, Wang L, Irwin DM, Zhang YE, Zhang YP. Wu DD, et al. J Mol Cell Biol. 2015 Aug;7(4):314-25. doi: 10.1093/jmcb/mjv043. Epub 2015 Jul 17. J Mol Cell Biol. 2015. PMID: 26186942

3

GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes.

Shao Y, Chen C, Shen H, He BZ, Yu D, Jiang S, Zhao S, Gao Z, Zhu Z, Chen X, Fu Y, Chen H, Gao G, Long M, Zhang YE. Shao Y, et al. Genome Res. 2019 Apr;29(4):682-696. doi: 10.1101/gr.238733.118. Epub 2019 Mar 12. Genome Res. 2019. PMID: 30862647 Free PMC article.

4

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.

Chen L, Qiu Q, Jiang Y, Wang K, Lin Z, Li Z, Bibi F, Yang Y, Wang J, Nie W, Su W, Liu G, Li Q, Fu W, Pan X, Liu C, Yang J, Zhang C, Yin Y, Wang Y, Zhao Y, Zhang C, Wang Z, Qin Y, Liu W, Wang B, Ren Y, Zhang R, Zeng Y, da Fonseca RR, Wei B, Li R, Wan W, Zhao R, Zhu W, Wang Y, Duan S, Gao Y, Zhang YE, Chen C, Hvilsom C, Epps CW, Chemnick LG, Dong Y, Mirarab S, Siegismund HR, Ryder OA, Gilbert MTP, Lewin HA, Zhang G, Heller R, Wang W. Chen L, et al. Science. 2019 Jun 21;364(6446):eaav6202. doi: 10.1126/science.aav6202. Science. 2019. PMID: 31221828

5

Gene expression across mammalian organ development.

Cardoso-Moreira M, Halbert J, Valloton D, Velten B, Chen C, Shao Y, Liechti A, Ascenção K, Rummel C, Ovchinnikova S, Mazin PV, Xenarios I, Harshman K, Mort M, Cooper DN, Sandi C, Soares MJ, Ferreira PG, Afonso S, Carneiro M, Turner JMA, VandeBerg JL, Fallahshahroudi A, Jensen P, Behr R, Lisgo S, Lindsay S, Khaitovich P, Huber W, Baker J, Anders S, Zhang YE, Kaessmann H. Cardoso-Moreira M, et al. Nature. 2019 Jul;571(7766):505-509. doi: 10.1038/s41586-019-1338-5. Epub 2019 Jun 26. Nature. 2019. PMID: 31243369 Free PMC article.

6

The evolution of ancestral and species-specific adaptations in snowfinches at the Qinghai-Tibet Plateau.

Qu Y, Chen C, Chen X, Hao Y, She H, Wang M, Ericson PGP, Lin H, Cai T, Song G, Jia C, Chen C, Zhang H, Li J, Liang L, Wu T, Zhao J, Gao Q, Zhang G, Zhai W, Zhang C, Zhang YE, Lei F. Qu Y, et al. Proc Natl Acad Sci U S A. 2021 Mar 30;118(13):e2012398118. doi: 10.1073/pnas.2012398118. Proc Natl Acad Sci U S A. 2021. PMID: 33753478 Free PMC article.

7

Genomic analyses of new genes and their phenotypic effects reveal rapid evolution of essential functions in Drosophila development.

Xia S, VanKuren NW, Chen C, Zhang L, Kemkemer C, Shao Y, Jia H, Lee U, Advani AS, Gschwend A, Vibranovski MD, Chen S, Zhang YE, Long M. Xia S, et al. PLoS Genet. 2021 Jul 9;17(7):e1009654. doi: 10.1371/journal.pgen.1009654. eCollection 2021 Jul. PLoS Genet. 2021. PMID: 34242211 Free PMC article.

8

Pattern of New Gene Origination in a Special Fish Lineage, the Flatfishes.

Li H, Chen C, Wang Z, Wang K, Li Y, Wang W. Li H, et al. Genes (Basel). 2021 Nov 19;12(11):1819. doi: 10.3390/genes12111819. Genes (Basel). 2021. PMID: 34828425 Free PMC article.

9

Ruminant-specific genes identified using high-quality genome data and their roles in rumen evolution.

Chen C, Yin Y, Li H, Zhou B, Zhou J, Zhou X, Li Z, Liu G, Pan X, Zhang R, Lin Z, Chen L, Qiu Q, Zhang YE, Wang W. Chen C, et al. Sci Bull (Beijing). 2022 Apr 30;67(8):825-835. doi: 10.1016/j.scib.2022.01.023. Epub 2022 Jan 31. Sci Bull (Beijing). 2022. PMID: 36546235

10

Integrative Omics Reveals Rapidly Evolving Regulatory Sequences Driving Primate Brain Evolution.

Zhuang XL, Zhang JJ, Shao Y, Ye Y, Chen CY, Zhou L, Wang ZB, Luo X, Su B, Yao YG, Cooper DN, Hu BX, Wang L, Qi XG, Lin J, Zhang GJ, Wang W, Sheng N, Wu DD. Zhuang XL, et al. Among authors: chen cy. Mol Biol Evol. 2023 Aug 3;40(8):msad173. doi: 10.1093/molbev/msad173. Mol Biol Evol. 2023. PMID: 37494289 Free PMC article.

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