Chen CL - Search Results

1

Kronos scRT: a uniform framework for single-cell replication timing analysis.

Gnan S, Josephides JM, Wu X, Spagnuolo M, Saulebekova D, Bohec M, Dumont M, Baudrin LG, Fachinetti D, Baulande S, Chen CL. Gnan S, et al. Among authors: chen cl. Nat Commun. 2022 Apr 28;13(1):2329. doi: 10.1038/s41467-022-30043-x. Nat Commun. 2022. PMID: 35484127 Free PMC article.

2

Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm.

Audit B, Baker A, Chen CL, Rappailles A, Guilbaud G, Julienne H, Goldar A, d'Aubenton-Carafa Y, Hyrien O, Thermes C, Arneodo A. Audit B, et al. Among authors: chen cl. Nat Protoc. 2013 Jan;8(1):98-110. doi: 10.1038/nprot.2012.145. Epub 2012 Dec 13. Nat Protoc. 2013. PMID: 23237832

3

Replication landscape of the human genome.

Petryk N, Kahli M, d'Aubenton-Carafa Y, Jaszczyszyn Y, Shen Y, Silvain M, Thermes C, Chen CL, Hyrien O. Petryk N, et al. Among authors: chen cl. Nat Commun. 2016 Jan 11;7:10208. doi: 10.1038/ncomms10208. Nat Commun. 2016. PMID: 26751768 Free PMC article.

4

Transcription-mediated organization of the replication initiation program across large genes sets common fragile sites genome-wide.

Brison O, El-Hilali S, Azar D, Koundrioukoff S, Schmidt M, Nähse V, Jaszczyszyn Y, Lachages AM, Dutrillaux B, Thermes C, Debatisse M, Chen CL. Brison O, et al. Among authors: chen cl. Nat Commun. 2019 Dec 13;10(1):5693. doi: 10.1038/s41467-019-13674-5. Nat Commun. 2019. PMID: 31836700 Free PMC article.

5

Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites.

Promonet A, Padioleau I, Liu Y, Sanz L, Biernacka A, Schmitz AL, Skrzypczak M, Sarrazin A, Mettling C, Rowicka M, Ginalski K, Chedin F, Chen CL, Lin YL, Pasero P. Promonet A, et al. Among authors: chen cl. Nat Commun. 2020 Aug 7;11(1):3940. doi: 10.1038/s41467-020-17858-2. Nat Commun. 2020. PMID: 32769985 Free PMC article.

6

Exo1 recruits Cdc5 polo kinase to MutLγ to ensure efficient meiotic crossover formation.

Sanchez A, Adam C, Rauh F, Duroc Y, Ranjha L, Lombard B, Mu X, Wintrebert M, Loew D, Guarné A, Gnan S, Chen CL, Keeney S, Cejka P, Guérois R, Klein F, Charbonnier JB, Borde V. Sanchez A, et al. Among authors: chen cl. Proc Natl Acad Sci U S A. 2020 Dec 1;117(48):30577-30588. doi: 10.1073/pnas.2013012117. Epub 2020 Nov 16. Proc Natl Acad Sci U S A. 2020. PMID: 33199619 Free PMC article.

7

DNA molecular combing-based replication fork directionality profiling.

Blin M, Lacroix L, Petryk N, Jaszczyszyn Y, Chen CL, Hyrien O, Le Tallec B. Blin M, et al. Among authors: chen cl. Nucleic Acids Res. 2021 Jul 9;49(12):e69. doi: 10.1093/nar/gkab219. Nucleic Acids Res. 2021. PMID: 33836085 Free PMC article.

8

DNA transposons mediate duplications via transposition-independent and -dependent mechanisms in metazoans.

Tan S, Ma H, Wang J, Wang M, Wang M, Yin H, Zhang Y, Zhang X, Shen J, Wang D, Banes GL, Zhang Z, Wu J, Huang X, Chen H, Ge S, Chen CL, Zhang YE. Tan S, et al. Among authors: chen cl, chen h. Nat Commun. 2021 Jul 13;12(1):4280. doi: 10.1038/s41467-021-24585-9. Nat Commun. 2021. PMID: 34257290 Free PMC article.

9

GC content, but not nucleosome positioning, directly contributes to intron splicing efficiency in Paramecium.

Gnan S, Matelot M, Weiman M, Arnaiz O, Guérin F, Sperling L, Bétermier M, Thermes C, Chen CL, Duharcourt S. Gnan S, et al. Among authors: chen cl. Genome Res. 2022 Apr;32(4):699-709. doi: 10.1101/gr.276125.121. Epub 2022 Mar 9. Genome Res. 2022. PMID: 35264448 Free PMC article.

10

Cohesin-mediated loop anchors confine the locations of human replication origins.

Emerson DJ, Zhao PA, Cook AL, Barnett RJ, Klein KN, Saulebekova D, Ge C, Zhou L, Simandi Z, Minsk MK, Titus KR, Wang W, Gong W, Zhang D, Yang L, Venev SV, Gibcus JH, Yang H, Sasaki T, Kanemaki MT, Yue F, Dekker J, Chen CL, Gilbert DM, Phillips-Cremins JE. Emerson DJ, et al. Among authors: chen cl. Nature. 2022 Jun;606(7915):812-819. doi: 10.1038/s41586-022-04803-0. Epub 2022 Jun 8. Nature. 2022. PMID: 35676475 Free PMC article.

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