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Sequencing a Juglans regia × J. microcarpa hybrid yields high-quality genome assemblies of parental species.
Zhu T, Wang L, You FM, Rodriguez JC, Deal KR, Chen L, Li J, Chakraborty S, Balan B, Jiang CZ, Brown PJ, Leslie CA, Aradhya MK, Dandekar AM, McGuire PE, Kluepfel D, Dvorak J, Luo MC. Zhu T, et al. Among authors: chakraborty s. Hortic Res. 2019 Mar 25;6:55. doi: 10.1038/s41438-019-0139-1. eCollection 2019. Hortic Res. 2019. PMID: 30937174 Free PMC article.
The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols.
Martínez-García PJ, Crepeau MW, Puiu D, Gonzalez-Ibeas D, Whalen J, Stevens KA, Paul R, Butterfield TS, Britton MT, Reagan RL, Chakraborty S, Walawage SL, Vasquez-Gross HA, Cardeno C, Famula RA, Pratt K, Kuruganti S, Aradhya MK, Leslie CA, Dandekar AM, Salzberg SL, Wegrzyn JL, Langley CH, Neale DB. Martínez-García PJ, et al. Among authors: chakraborty s. Plant J. 2016 Sep;87(5):507-32. doi: 10.1111/tpj.13207. Epub 2016 Jul 18. Plant J. 2016. PMID: 27145194 Free article.
Genomic Variation Among and Within Six Juglans Species.
Stevens KA, Woeste K, Chakraborty S, Crepeau MW, Leslie CA, Martínez-García PJ, Puiu D, Romero-Severson J, Coggeshall M, Dandekar AM, Kluepfel D, Neale DB, Salzberg SL, Langley CH. Stevens KA, et al. Among authors: chakraborty s. G3 (Bethesda). 2018 Jul 2;8(7):2153-2165. doi: 10.1534/g3.118.200030. G3 (Bethesda). 2018. PMID: 29792315 Free PMC article.
High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome.
Marrano A, Britton M, Zaini PA, Zimin AV, Workman RE, Puiu D, Bianco L, Pierro EAD, Allen BJ, Chakraborty S, Troggio M, Leslie CA, Timp W, Dandekar A, Salzberg SL, Neale DB. Marrano A, et al. Among authors: chakraborty s. Gigascience. 2020 May 1;9(5):giaa050. doi: 10.1093/gigascience/giaa050. Gigascience. 2020. PMID: 32432329 Free PMC article.
YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut.
Chakraborty S, Britton M, Wegrzyn J, Butterfield T, Martínez-García PJ, Reagan RL, Rao BJ, Leslie CA, Aradhaya M, Neale D, Woeste K, Dandekar AM. Chakraborty S, et al. F1000Res. 2015 Jun 17;4:155. doi: 10.12688/f1000research.6617.2. eCollection 2015. F1000Res. 2015. PMID: 26870317 Free PMC article.
4,250 results