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Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.
Hu B, Canon S, Eloe-Fadrosh EA, Anubhav, Babinski M, Corilo Y, Davenport K, Duncan WD, Fagnan K, Flynn M, Foster B, Hays D, Huntemann M, Jackson EKP, Kelliher J, Li PE, Lo CC, Mans D, McCue LA, Mouncey N, Mungall CJ, Piehowski PD, Purvine SO, Smith M, Varghese NJ, Winston D, Xu Y, Chain PSG. Hu B, et al. Among authors: chain psg. Front Bioinform. 2022 Jan 17;1:826370. doi: 10.3389/fbinf.2021.826370. eCollection 2021. Front Bioinform. 2022. PMID: 36303775 Free PMC article. Review.
[No title available]
[No authors listed] [No authors listed] PMID: 36783355
Bridging Place-Based Astrobiology Education with Genomics, Including Descriptions of Three Novel Bacterial Species Isolated from Mars Analog Sites of Cultural Relevance.
Prescott RD, Chan YL, Tong EJ, Bunn F, Onouye CT, Handel C, Lo CC, Davenport K, Johnson S, Flynn M, Saito JA, Lee H Jr, Wong K, Lawson BN, Hiura K, Sager K, Sadones M, Hill EC, Esibill D, Cockell CS, Santomartino R, Chain PSG, Decho AW, Donachie SP. Prescott RD, et al. Among authors: chain psg. Astrobiology. 2023 Dec;23(12):1348-1367. doi: 10.1089/ast.2023.0072. Epub 2023 Dec 11. Astrobiology. 2023. PMID: 38079228 Free PMC article.
Diversity of fungal microbiome obtained from plant rhizoplanes.
Lupini S, Nguyen HN, Morales D 3rd, House GL, Paudel S, Chain PSG, Rodrigues DF. Lupini S, et al. Among authors: chain psg. Sci Total Environ. 2023 Sep 20;892:164506. doi: 10.1016/j.scitotenv.2023.164506. Epub 2023 Jun 7. Sci Total Environ. 2023. PMID: 37295515
Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows.
Connor R, Shakya M, Yarmosh DA, Maier W, Martin R, Bradford R, Brister JR, Chain PSG, Copeland CA, di Iulio J, Hu B, Ebert P, Gunti J, Jin Y, Katz KS, Kochergin A, LaRosa T, Li J, Li PE, Lo CC, Rashid S, Maiorova ES, Xiao C, Zalunin V, Purcell L, Pruitt KD. Connor R, et al. Among authors: chain psg. Viruses. 2024 Mar 11;16(3):430. doi: 10.3390/v16030430. Viruses. 2024. PMID: 38543795 Free PMC article.
128 results