Celik MH - Search Results

1

Personalized Metabolic Analysis of Diseases.

Cakmak A, Celik MH. Cakmak A, et al. Among authors: celik mh. IEEE/ACM Trans Comput Biol Bioinform. 2021 May-Jun;18(3):1014-1025. doi: 10.1109/TCBB.2020.3008196. Epub 2021 Jun 3. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 32750887

2

Structural profile matrices for predicting structural properties of proteins.

Azginoglu N, Aydin Z, Celik M. Azginoglu N, et al. J Bioinform Comput Biol. 2020 Aug;18(4):2050022. doi: 10.1142/S0219720020500225. Epub 2020 Jul 10. J Bioinform Comput Biol. 2020. PMID: 32649260

3

Developing structural profile matrices for protein secondary structure and solvent accessibility prediction.

Aydin Z, Azginoglu N, Bilgin HI, Celik M. Aydin Z, et al. Bioinformatics. 2019 Oct 15;35(20):4004-4010. doi: 10.1093/bioinformatics/btz238. Bioinformatics. 2019. PMID: 30937435

4

Multi fragment melting analysis system (MFMAS) for one-step identification of lactobacilli.

Kesmen Z, Kılıç Ö, Gormez Y, Çelik M, Bakir-Gungor B. Kesmen Z, et al. J Microbiol Methods. 2020 Oct;177:106045. doi: 10.1016/j.mimet.2020.106045. Epub 2020 Sep 3. J Microbiol Methods. 2020. PMID: 32890569

5

Assessment of Multi Fragment Melting Analysis System (MFMAS) for the Identification of Food-Borne Yeasts.

Kesmen Z, Büyükkiraz ME, Özbekar E, Çelik M, Özkök FÖ, Kılıç Ö, Çetin B, Yetim H. Kesmen Z, et al. Curr Microbiol. 2018 Jun;75(6):716-725. doi: 10.1007/s00284-018-1437-9. Epub 2018 Feb 26. Curr Microbiol. 2018. PMID: 29484449

6

Convolutional neural network analysis of recurrence plots for high resolution melting classification.

Ozkok FO, Celik M. Ozkok FO, et al. Comput Methods Programs Biomed. 2021 Aug;207:106139. doi: 10.1016/j.cmpb.2021.106139. Epub 2021 May 5. Comput Methods Programs Biomed. 2021. PMID: 34029831

7

Diagnosis and classification of cancer using hybrid model based on ReliefF and convolutional neural network.

Kilicarslan S, Adem K, Celik M. Kilicarslan S, et al. Med Hypotheses. 2020 Apr;137:109577. doi: 10.1016/j.mehy.2020.109577. Epub 2020 Jan 20. Med Hypotheses. 2020. PMID: 31991364

8

CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods.

Critical Assessment of Genome Interpretation Consortium. Critical Assessment of Genome Interpretation Consortium. Genome Biol. 2024 Feb 22;25(1):53. doi: 10.1186/s13059-023-03113-6. Genome Biol. 2024. PMID: 38389099 Free PMC article.

9

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.

Reese F, Williams B, Balderrama-Gutierrez G, Wyman D, Çelik MH, Rebboah E, Rezaie N, Trout D, Razavi-Mohseni M, Jiang Y, Borsari B, Morabito S, Liang HY, McGill CJ, Rahmanian S, Sakr J, Jiang S, Zeng W, Carvalho K, Weimer AK, Dionne LA, McShane A, Bedi K, Elhajjajy SI, Upchurch S, Jou J, Youngworth I, Gabdank I, Sud P, Jolanki O, Strattan JS, Kagda MS, Snyder MP, Hitz BC, Moore JE, Weng Z, Bennett D, Reinholdt L, Ljungman M, Beer MA, Gerstein MB, Pachter L, Guigó R, Wold BJ, Mortazavi A. Reese F, et al. Among authors: celik mh. bioRxiv [Preprint]. 2023 May 16:2023.05.15.540865. doi: 10.1101/2023.05.15.540865. bioRxiv. 2023. PMID: 37292896 Free PMC article. Preprint.

10

Aberrant splicing prediction across human tissues.

Wagner N, Çelik MH, Hölzlwimmer FR, Mertes C, Prokisch H, Yépez VA, Gagneur J. Wagner N, et al. Among authors: celik mh. Nat Genet. 2023 May;55(5):861-870. doi: 10.1038/s41588-023-01373-3. Epub 2023 May 4. Nat Genet. 2023. PMID: 37142848

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