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Transcriptomic and metabolomic data integration.
Cavill R, Jennen D, Kleinjans J, Briedé JJ. Cavill R, et al. Brief Bioinform. 2016 Sep;17(5):891-901. doi: 10.1093/bib/bbv090. Epub 2015 Oct 14. Brief Bioinform. 2016. PMID: 26467821 Review.
Extensive temporal transcriptome and microRNA analyses identify molecular mechanisms underlying mitochondrial dysfunction induced by multi-walled carbon nanotubes in human lung cells.
Nymark P, Wijshoff P, Cavill R, van Herwijnen M, Coonen ML, Claessen S, Catalán J, Norppa H, Kleinjans JC, Briedé JJ. Nymark P, et al. Among authors: cavill r. Nanotoxicology. 2015;9(5):624-35. doi: 10.3109/17435390.2015.1017022. Epub 2015 Apr 1. Nanotoxicology. 2015. PMID: 25831214
Use of deep learning methods to translate drug-induced gene expression changes from rat to human primary hepatocytes.
O'Donovan SD, Driessens K, Lopatta D, Wimmenauer F, Lukas A, Neeven J, Stumm T, Smirnov E, Lenz M, Ertaylan G, Jennen DGJ, van Riel NAW, Cavill R, Peeters RLM, de Kok TMCM. O'Donovan SD, et al. Among authors: cavill r. PLoS One. 2020 Aug 11;15(8):e0236392. doi: 10.1371/journal.pone.0236392. eCollection 2020. PLoS One. 2020. PMID: 32780735 Free PMC article.
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.
Kamburov A, Cavill R, Ebbels TM, Herwig R, Keun HC. Kamburov A, et al. Among authors: cavill r. Bioinformatics. 2011 Oct 15;27(20):2917-8. doi: 10.1093/bioinformatics/btr499. Epub 2011 Sep 4. Bioinformatics. 2011. PMID: 21893519
A web services programming interface is provided at http://impala.molgen.mpg.de/wsdoc. CONTACT: kamburov@molgen.mpg.de; r.cavill@imperial.ac.uk; h.keun@imperial.ac.uk SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
A web services programming interface is provided at http://impala.molgen.mpg.de/wsdoc. CONTACT: kamburov@molgen.mpg.de; r.cavill …
44 results