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CoVaCS: a consensus variant calling system.
Chiara M, Gioiosa S, Chillemi G, D'Antonio M, Flati T, Picardi E, Zambelli F, Horner DS, Pesole G, Castrignanò T. Chiara M, et al. Among authors: castrignano t. BMC Genomics. 2018 Feb 5;19(1):120. doi: 10.1186/s12864-018-4508-1. BMC Genomics. 2018. PMID: 29402227 Free PMC article.
WEP: a high-performance analysis pipeline for whole-exome data.
D'Antonio M, D'Onorio De Meo P, Paoletti D, Elmi B, Pallocca M, Sanna N, Picardi E, Pesole G, Castrignanò T. D'Antonio M, et al. Among authors: castrignano t. BMC Bioinformatics. 2013;14 Suppl 7(Suppl 7):S11. doi: 10.1186/1471-2105-14-S7-S11. Epub 2013 Apr 22. BMC Bioinformatics. 2013. PMID: 23815231 Free PMC article.
SpliceAid-F: a database of human splicing factors and their RNA-binding sites.
Giulietti M, Piva F, D'Antonio M, D'Onorio De Meo P, Paoletti D, Castrignanò T, D'Erchia AM, Picardi E, Zambelli F, Principato G, Pavesi G, Pesole G. Giulietti M, et al. Among authors: castrignano t. Nucleic Acids Res. 2013 Jan;41(Database issue):D125-31. doi: 10.1093/nar/gks997. Epub 2012 Oct 30. Nucleic Acids Res. 2013. PMID: 23118479 Free PMC article.
Exploring the RNA editing potential of RNA-Seq data by ExpEdit.
D'Antonio M, Picardi E, Castrignanò T, D'Erchia AM, Pesole G. D'Antonio M, et al. Among authors: castrignano t. Methods Mol Biol. 2015;1269:327-38. doi: 10.1007/978-1-4939-2291-8_20. Methods Mol Biol. 2015. PMID: 25577388
RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.
D'Antonio M, D'Onorio De Meo P, Pallocca M, Picardi E, D'Erchia AM, Calogero RA, Castrignanò T, Pesole G. D'Antonio M, et al. Among authors: castrignano t. BMC Genomics. 2015;16(Suppl 6):S3. doi: 10.1186/1471-2164-16-S6-S3. Epub 2015 Jun 1. BMC Genomics. 2015. PMID: 26046471 Free PMC article.
RNA Editing Detection in HPC Infrastructures.
Lo Giudice C, Mansi L, Flati T, Gioiosa S, Chillemi G, Libro P, Castrignanò T, Pesole G, Picardi E. Lo Giudice C, et al. Among authors: castrignano t. Methods Mol Biol. 2021;2284:253-270. doi: 10.1007/978-1-0716-1307-8_14. Methods Mol Biol. 2021. PMID: 33835447
RAP: A Web Tool for RNA-Seq Data Analysis.
D'Antonio M, Libro P, Picardi E, Pesole G, Castrignanò T. D'Antonio M, et al. Among authors: castrignano t. Methods Mol Biol. 2021;2284:393-415. doi: 10.1007/978-1-0716-1307-8_21. Methods Mol Biol. 2021. PMID: 33835454
62 results