Carvalho P - Search Results

1

De novo sequencing of proteins by mass spectrometry.

Vitorino R, Guedes S, Trindade F, Correia I, Moura G, Carvalho P, Santos MAS, Amado F. Vitorino R, et al. Among authors: carvalho p. Expert Rev Proteomics. 2020 Jul-Aug;17(7-8):595-607. doi: 10.1080/14789450.2020.1831387. Epub 2020 Oct 21. Expert Rev Proteomics. 2020. PMID: 33016158 Review.

2

Caititu: a tool to graphically represent peptide sequence coverage and domain distribution.

Carvalho PC, Junqueira M, Valente RH, Domont GB. Carvalho PC, et al. J Proteomics. 2008 Oct 7;71(4):486-9. doi: 10.1016/j.jprot.2008.06.015. Epub 2008 Jul 16. J Proteomics. 2008. PMID: 18678288

3

Identifying components of protein complexes in C. elegans using co-immunoprecipitation and mass spectrometry.

Moresco JJ, Carvalho PC, Yates JR 3rd. Moresco JJ, et al. J Proteomics. 2010 Oct 10;73(11):2198-204. doi: 10.1016/j.jprot.2010.05.008. Epub 2010 May 28. J Proteomics. 2010. PMID: 20546956 Free PMC article. Review.

4

Can the false-discovery rate be misleading?

Barboza R, Cociorva D, Xu T, Barbosa VC, Perales J, Valente RH, França FM, Yates JR 3rd, Carvalho PC. Barboza R, et al. Proteomics. 2011 Oct;11(20):4105-8. doi: 10.1002/pmic.201100297. Epub 2011 Sep 6. Proteomics. 2011. PMID: 21834134 Free PMC article.

5

Search engine processor: Filtering and organizing peptide spectrum matches.

Carvalho PC, Fischer JS, Xu T, Cociorva D, Balbuena TS, Valente RH, Perales J, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. Proteomics. 2012 Apr;12(7):944-9. doi: 10.1002/pmic.201100529. Proteomics. 2012. PMID: 22311825 Free PMC article.

6

PatternLab: from mass spectra to label-free differential shotgun proteomics.

Carvalho PC, Fischer JSG, Xu T, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. Curr Protoc Bioinformatics. 2012 Dec;Chapter 13:13.19.1-13.19.18. doi: 10.1002/0471250953.bi1319s40. Curr Protoc Bioinformatics. 2012. PMID: 23255152

7

Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics.

Leprevost FV, Lima DB, Crestani J, Perez-Riverol Y, Zanchin N, Barbosa VC, Carvalho PC. Leprevost FV, et al. Among authors: carvalho pc. J Proteomics. 2013 Aug 26;89:179-82. doi: 10.1016/j.jprot.2013.06.013. Epub 2013 Jun 21. J Proteomics. 2013. PMID: 23796493

8

PepExplorer: a similarity-driven tool for analyzing de novo sequencing results.

Leprevost FV, Valente RH, Lima DB, Perales J, Melani R, Yates JR 3rd, Barbosa VC, Junqueira M, Carvalho PC. Leprevost FV, et al. Mol Cell Proteomics. 2014 Sep;13(9):2480-9. doi: 10.1074/mcp.M113.037002. Epub 2014 May 30. Mol Cell Proteomics. 2014. PMID: 24878498 Free PMC article.

9

A scoring model for phosphopeptide site localization and its impact on the question of whether to use MSA.

Fischer JSDG, Dos Santos MDM, Marchini FK, Barbosa VC, Carvalho PC, Zanchin NIT. Fischer JSDG, et al. J Proteomics. 2015 Nov 3;129:42-50. doi: 10.1016/j.jprot.2015.01.008. Epub 2015 Jan 23. J Proteomics. 2015. PMID: 25623781

10

Proteomic profiling of nipple aspirate fluid (NAF): Exploring the complementarity of different peptide fractionation strategies.

Brunoro GV, Carvalho PC, Ferreira AT, Perales J, Valente RH, de Moura Gallo CV, Pagnoncelli D, Neves-Ferreira AG. Brunoro GV, et al. J Proteomics. 2015 Mar 18;117:86-94. doi: 10.1016/j.jprot.2015.01.011. Epub 2015 Jan 29. J Proteomics. 2015. PMID: 25638022

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