Caporaso JG - Search Results

1

Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey.

Vogtmann E, Chaturvedi AK, Blaser MJ, Bokulich NA, Caporaso JG, Gillison ML, Hua X, Hullings AG, Knight R, Purandare V, Shi J, Wan Y, Freedman ND, Abnet CC. Vogtmann E, et al. Among authors: caporaso jg. Lancet Microbe. 2023 Feb;4(2):e60-e61. doi: 10.1016/S2666-5247(22)00333-0. Epub 2022 Nov 28. Lancet Microbe. 2023. PMID: 36455567 Free article. No abstract available.

2

Quantitative microbial ecology through stable isotope probing.

Hungate BA, Mau RL, Schwartz E, Caporaso JG, Dijkstra P, van Gestel N, Koch BJ, Liu CM, McHugh TA, Marks JC, Morrissey EM, Price LB. Hungate BA, et al. Among authors: caporaso jg. Appl Environ Microbiol. 2015 Nov;81(21):7570-81. doi: 10.1128/AEM.02280-15. Epub 2015 Aug 21. Appl Environ Microbiol. 2015. PMID: 26296731 Free PMC article.

3

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

Fierer N, Leff JW, Adams BJ, Nielsen UN, Bates ST, Lauber CL, Owens S, Gilbert JA, Wall DH, Caporaso JG. Fierer N, et al. Among authors: caporaso jg. Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21390-5. doi: 10.1073/pnas.1215210110. Epub 2012 Dec 10. Proc Natl Acad Sci U S A. 2012. PMID: 23236140 Free PMC article.

4

Concept recognition for extracting protein interaction relations from biomedical text.

Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L. Baumgartner WA Jr, et al. Among authors: caporaso jg. Genome Biol. 2008;9 Suppl 2(Suppl 2):S9. doi: 10.1186/gb-2008-9-s2-s9. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834500 Free PMC article.

5

MutationFinder: a high-performance system for extracting point mutation mentions from text.

Caporaso JG, Baumgartner WA Jr, Randolph DA, Cohen KB, Hunter L. Caporaso JG, et al. Bioinformatics. 2007 Jul 15;23(14):1862-5. doi: 10.1093/bioinformatics/btm235. Epub 2007 May 11. Bioinformatics. 2007. PMID: 17495998 Free PMC article.

6

Rapid pattern development for concept recognition systems: application to point mutations.

Caporaso JG, Baumgartner WA, Randolph DA, Cohen KB, Hunter L. Caporaso JG, et al. J Bioinform Comput Biol. 2007 Dec;5(6):1233-59. doi: 10.1142/s0219720007003144. J Bioinform Comput Biol. 2007. PMID: 18172927

7

Intrinsic evaluation of text mining tools may not predict performance on realistic tasks.

Caporaso JG, Deshpande N, Fink JL, Bourne PE, Cohen KB, Hunter L. Caporaso JG, et al. Pac Symp Biocomput. 2008:640-51. Pac Symp Biocomput. 2008. PMID: 18229722 Free PMC article.

8

Error minimization and coding triplet/binding site associations are independent features of the canonical genetic code.

Caporaso JG, Yarus M, Knight R. Caporaso JG, et al. J Mol Evol. 2005 Nov;61(5):597-607. doi: 10.1007/s00239-004-0314-2. Epub 2005 Oct 6. J Mol Evol. 2005. PMID: 16211428

9

New insight into the diversity of life's building blocks: evenness, not variance.

Caporaso JG, Knight R. Caporaso JG, et al. Astrobiology. 2011 Apr;11(3):197-8. doi: 10.1089/ast.2011.2280. Epub 2011 Mar 18. Astrobiology. 2011. PMID: 21417743 No abstract available.

10

The Western English Channel contains a persistent microbial seed bank.

Caporaso JG, Paszkiewicz K, Field D, Knight R, Gilbert JA. Caporaso JG, et al. ISME J. 2012 Jun;6(6):1089-93. doi: 10.1038/ismej.2011.162. Epub 2011 Nov 10. ISME J. 2012. PMID: 22071345 Free PMC article.

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