Caporaso JG - Search Results

1

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Langille MG, et al. Among authors: caporaso jg. Nat Biotechnol. 2013 Sep;31(9):814-21. doi: 10.1038/nbt.2676. Epub 2013 Aug 25. Nat Biotechnol. 2013. PMID: 23975157 Free PMC article.

2

Error minimization and coding triplet/binding site associations are independent features of the canonical genetic code.

Caporaso JG, Yarus M, Knight R. Caporaso JG, et al. J Mol Evol. 2005 Nov;61(5):597-607. doi: 10.1007/s00239-004-0314-2. Epub 2005 Oct 6. J Mol Evol. 2005. PMID: 16211428

3

PyCogent: a toolkit for making sense from sequence.

Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA. Knight R, et al. Among authors: caporaso jg. Genome Biol. 2007;8(8):R171. doi: 10.1186/gb-2007-8-8-r171. Genome Biol. 2007. PMID: 17708774 Free PMC article.

4

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. Caporaso JG, et al. Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. Nat Methods. 2010. PMID: 20383131 Free PMC article. No abstract available.

5

Soil bacterial and fungal communities across a pH gradient in an arable soil.

Rousk J, Bååth E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N. Rousk J, et al. Among authors: caporaso jg. ISME J. 2010 Oct;4(10):1340-51. doi: 10.1038/ismej.2010.58. Epub 2010 May 6. ISME J. 2010. PMID: 20445636 Free article.

6

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. Caporaso JG, et al. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4516-22. doi: 10.1073/pnas.1000080107. Epub 2010 Jun 3. Proc Natl Acad Sci U S A. 2011. PMID: 20534432 Free PMC article.

7

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes.

Chu H, Fierer N, Lauber CL, Caporaso JG, Knight R, Grogan P. Chu H, et al. Among authors: caporaso jg. Environ Microbiol. 2010 Nov;12(11):2998-3006. doi: 10.1111/j.1462-2920.2010.02277.x. Environ Microbiol. 2010. PMID: 20561020

8

Examining the global distribution of dominant archaeal populations in soil.

Bates ST, Berg-Lyons D, Caporaso JG, Walters WA, Knight R, Fierer N. Bates ST, et al. Among authors: caporaso jg. ISME J. 2011 May;5(5):908-17. doi: 10.1038/ismej.2010.171. Epub 2010 Nov 18. ISME J. 2011. PMID: 21085198 Free PMC article.

9

Bacterial communities associated with the lichen symbiosis.

Bates ST, Cropsey GW, Caporaso JG, Knight R, Fierer N. Bates ST, et al. Among authors: caporaso jg. Appl Environ Microbiol. 2011 Feb;77(4):1309-14. doi: 10.1128/AEM.02257-10. Epub 2010 Dec 17. Appl Environ Microbiol. 2011. PMID: 21169444 Free PMC article.

10

Host-associated and free-living phage communities differ profoundly in phylogenetic composition.

Caporaso JG, Knight R, Kelley ST. Caporaso JG, et al. PLoS One. 2011 Feb 24;6(2):e16900. doi: 10.1371/journal.pone.0016900. PLoS One. 2011. PMID: 21383980 Free PMC article.

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