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The Mycobacterium tuberculosis regulatory network and hypoxia.
Galagan JE, Minch K, Peterson M, Lyubetskaya A, Azizi E, Sweet L, Gomes A, Rustad T, Dolganov G, Glotova I, Abeel T, Mahwinney C, Kennedy AD, Allard R, Brabant W, Krueger A, Jaini S, Honda B, Yu WH, Hickey MJ, Zucker J, Garay C, Weiner B, Sisk P, Stolte C, Winkler JK, Van de Peer Y, Iazzetti P, Camacho D, Dreyfuss J, Liu Y, Dorhoi A, Mollenkopf HJ, Drogaris P, Lamontagne J, Zhou Y, Piquenot J, Park ST, Raman S, Kaufmann SH, Mohney RP, Chelsky D, Moody DB, Sherman DR, Schoolnik GK. Galagan JE, et al. Among authors: camacho d. Nature. 2013 Jul 11;499(7457):178-83. doi: 10.1038/nature12337. Epub 2013 Jul 3. Nature. 2013. PMID: 23823726 Free PMC article.
Wisdom of crowds for robust gene network inference.
Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR; DREAM5 Consortium; Kellis M, Collins JJ, Stolovitzky G. Marbach D, et al. Among authors: camacho dm. Nat Methods. 2012 Jul 15;9(8):796-804. doi: 10.1038/nmeth.2016. Nat Methods. 2012. PMID: 22796662 Free PMC article.
Systems biology strikes gold.
Camacho DM, Collins JJ. Camacho DM, et al. Cell. 2009 Apr 3;137(1):24-6. doi: 10.1016/j.cell.2009.03.032. Cell. 2009. PMID: 19345182 Free article.
A complex human gut microbiome cultured in an anaerobic intestine-on-a-chip.
Jalili-Firoozinezhad S, Gazzaniga FS, Calamari EL, Camacho DM, Fadel CW, Bein A, Swenor B, Nestor B, Cronce MJ, Tovaglieri A, Levy O, Gregory KE, Breault DT, Cabral JMS, Kasper DL, Novak R, Ingber DE. Jalili-Firoozinezhad S, et al. Nat Biomed Eng. 2019 Jul;3(7):520-531. doi: 10.1038/s41551-019-0397-0. Epub 2019 May 13. Nat Biomed Eng. 2019. PMID: 31086325 Free PMC article.
Nutritional deficiency in an intestine-on-a-chip recapitulates injury hallmarks associated with environmental enteric dysfunction.
Bein A, Fadel CW, Swenor B, Cao W, Powers RK, Camacho DM, Naziripour A, Parsons A, LoGrande N, Sharma S, Kim S, Jalili-Firoozinezhad S, Grant J, Breault DT, Iqbal J, Ali A, Denson LA, Moore SR, Prantil-Baun R, Goyal G, Ingber DE. Bein A, et al. Nat Biomed Eng. 2022 Nov;6(11):1236-1247. doi: 10.1038/s41551-022-00899-x. Epub 2022 Jun 23. Nat Biomed Eng. 2022. PMID: 35739419 Free PMC article.
Next-Generation Machine Learning for Biological Networks.
Camacho DM, Collins KM, Powers RK, Costello JC, Collins JJ. Camacho DM, et al. Cell. 2018 Jun 14;173(7):1581-1592. doi: 10.1016/j.cell.2018.05.015. Epub 2018 Jun 7. Cell. 2018. PMID: 29887378 Free article. Review.
223 results