Calzone L - Search Results

1

Modeling regulatory networks at Virginia Tech.

Allen NA, Calzone L, Chen KC, Ciliberto A, Ramakrishnan N, Shaffer CA, Sible JC, Tyson JJ, Vass MT, Watson LT, Zwolak JW. Allen NA, et al. Among authors: calzone l. OMICS. 2003 Fall;7(3):285-99. doi: 10.1089/153623103322452404. OMICS. 2003. PMID: 14583117

2

Integrative analysis of cell cycle control in budding yeast.

Chen KC, Calzone L, Csikasz-Nagy A, Cross FR, Novak B, Tyson JJ. Chen KC, et al. Among authors: calzone l. Mol Biol Cell. 2004 Aug;15(8):3841-62. doi: 10.1091/mbc.e03-11-0794. Epub 2004 May 28. Mol Biol Cell. 2004. PMID: 15169868 Free PMC article.

3

Dynamical modeling of syncytial mitotic cycles in Drosophila embryos.

Calzone L, Thieffry D, Tyson JJ, Novak B. Calzone L, et al. Mol Syst Biol. 2007;3:131. doi: 10.1038/msb4100171. Epub 2007 Jul 31. Mol Syst Biol. 2007. PMID: 17667953 Free PMC article.

4

BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge.

Calzone L, Fages F, Soliman S. Calzone L, et al. Bioinformatics. 2006 Jul 15;22(14):1805-7. doi: 10.1093/bioinformatics/btl172. Epub 2006 May 3. Bioinformatics. 2006. PMID: 16672256

5

A comprehensive modular map of molecular interactions in RB/E2F pathway.

Calzone L, Gelay A, Zinovyev A, Radvanyi F, Barillot E. Calzone L, et al. Mol Syst Biol. 2008;4:173. doi: 10.1038/msb.2008.7. Epub 2008 Mar 4. Mol Syst Biol. 2008. PMID: 18319725 Free PMC article.

6

Predicting genetic interactions from Boolean models of biological networks.

Calzone L, Barillot E, Zinovyev A. Calzone L, et al. Integr Biol (Camb). 2015 Aug;7(8):921-9. doi: 10.1039/c5ib00029g. Epub 2015 May 11. Integr Biol (Camb). 2015. PMID: 25958956

7

Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.

Niarakis A, Waltemath D, Glazier J, Schreiber F, Keating SM, Nickerson D, Chaouiya C, Siegel A, Noël V, Hermjakob H, Helikar T, Soliman S, Calzone L. Niarakis A, et al. Among authors: calzone l. Brief Bioinform. 2022 Jul 18;23(4):bbac212. doi: 10.1093/bib/bbac212. Brief Bioinform. 2022. PMID: 35671510 Free PMC article.

8

Mathematical modelling of cell-fate decision in response to death receptor engagement.

Calzone L, Tournier L, Fourquet S, Thieffry D, Zhivotovsky B, Barillot E, Zinovyev A. Calzone L, et al. PLoS Comput Biol. 2010 Mar 5;6(3):e1000702. doi: 10.1371/journal.pcbi.1000702. PLoS Comput Biol. 2010. PMID: 20221256 Free PMC article.

9

On circuit functionality in Boolean networks.

Comet JP, Noual M, Richard A, Aracena J, Calzone L, Demongeot J, Kaufman M, Naldi A, Snoussi el H, Thieffry D. Comet JP, et al. Among authors: calzone l. Bull Math Biol. 2013 Jun;75(6):906-19. doi: 10.1007/s11538-013-9829-2. Epub 2013 Mar 16. Bull Math Biol. 2013. PMID: 23504387

10

Integrative modelling of the influence of MAPK network on cancer cell fate decision.

Grieco L, Calzone L, Bernard-Pierrot I, Radvanyi F, Kahn-Perlès B, Thieffry D. Grieco L, et al. Among authors: calzone l. PLoS Comput Biol. 2013 Oct;9(10):e1003286. doi: 10.1371/journal.pcbi.1003286. Epub 2013 Oct 24. PLoS Comput Biol. 2013. PMID: 24250280 Free PMC article.

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