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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.
Vallenet D, Calteau A, Dubois M, Amours P, Bazin A, Beuvin M, Burlot L, Bussell X, Fouteau S, Gautreau G, Lajus A, Langlois J, Planel R, Roche D, Rollin J, Rouy Z, Sabatet V, Médigue C. Vallenet D, et al. Among authors: calteau a. Nucleic Acids Res. 2020 Jan 8;48(D1):D579-D589. doi: 10.1093/nar/gkz926. Nucleic Acids Res. 2020. PMID: 31647104 Free PMC article.
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Médigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC, Vallenet D. Gautreau G, et al. Among authors: calteau a. PLoS Comput Biol. 2020 Mar 19;16(3):e1007732. doi: 10.1371/journal.pcbi.1007732. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32191703 Free PMC article.
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
Vallenet D, Belda E, Calteau A, Cruveiller S, Engelen S, Lajus A, Le Fèvre F, Longin C, Mornico D, Roche D, Rouy Z, Salvignol G, Scarpelli C, Thil Smith AA, Weiman M, Médigue C. Vallenet D, et al. Among authors: calteau a. Nucleic Acids Res. 2013 Jan;41(Database issue):D636-47. doi: 10.1093/nar/gks1194. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193269 Free PMC article.
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EP, Denamur E. Touchon M, et al. Among authors: calteau a. PLoS Genet. 2009 Jan;5(1):e1000344. doi: 10.1371/journal.pgen.1000344. Epub 2009 Jan 23. PLoS Genet. 2009. PMID: 19165319 Free PMC article.
Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.
Ficko-Blean E, Préchoux A, Thomas F, Rochat T, Larocque R, Zhu Y, Stam M, Génicot S, Jam M, Calteau A, Viart B, Ropartz D, Pérez-Pascual D, Correc G, Matard-Mann M, Stubbs KA, Rogniaux H, Jeudy A, Barbeyron T, Médigue C, Czjzek M, Vallenet D, McBride MJ, Duchaud E, Michel G. Ficko-Blean E, et al. Among authors: calteau a. Nat Commun. 2017 Nov 22;8(1):1685. doi: 10.1038/s41467-017-01832-6. Nat Commun. 2017. PMID: 29162826 Free PMC article.
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