Califano A - Search Results

1

Functional characterization of somatic mutations in cancer using network-based inference of protein activity.

Alvarez MJ, Shen Y, Giorgi FM, Lachmann A, Ding BB, Ye BH, Califano A. Alvarez MJ, et al. Among authors: califano a. Nat Genet. 2016 Aug;48(8):838-47. doi: 10.1038/ng.3593. Epub 2016 Jun 20. Nat Genet. 2016. PMID: 27322546 Free PMC article.

2

Reverse engineering of regulatory networks in human B cells.

Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A. Basso K, et al. Among authors: califano a. Nat Genet. 2005 Apr;37(4):382-90. doi: 10.1038/ng1532. Epub 2005 Mar 20. Nat Genet. 2005. PMID: 15778709

3

Reverse engineering cellular networks.

Margolin AA, Wang K, Lim WK, Kustagi M, Nemenman I, Califano A. Margolin AA, et al. Among authors: califano a. Nat Protoc. 2006;1(2):662-71. doi: 10.1038/nprot.2006.106. Nat Protoc. 2006. PMID: 17406294

4

A complementary role for ELF3 and TFL1 in the regulation of flowering time by ambient temperature.

Strasser B, Alvarez MJ, Califano A, Cerdán PD. Strasser B, et al. Among authors: califano a. Plant J. 2009 May;58(4):629-40. doi: 10.1111/j.1365-313X.2009.03811.x. Epub 2009 Feb 2. Plant J. 2009. PMID: 19187043 Free article.

5

Dissecting the interface between signaling and transcriptional regulation in human B cells.

Wang K, Alvarez MJ, Bisikirska BC, Linding R, Basso K, Dalla Favera R, Califano A. Wang K, et al. Among authors: califano a. Pac Symp Biocomput. 2009:264-75. Pac Symp Biocomput. 2009. PMID: 19209707 Free PMC article.

6

Mutations of multiple genes cause deregulation of NF-kappaB in diffuse large B-cell lymphoma.

Compagno M, Lim WK, Grunn A, Nandula SV, Brahmachary M, Shen Q, Bertoni F, Ponzoni M, Scandurra M, Califano A, Bhagat G, Chadburn A, Dalla-Favera R, Pasqualucci L. Compagno M, et al. Among authors: califano a. Nature. 2009 Jun 4;459(7247):717-21. doi: 10.1038/nature07968. Epub 2009 May 3. Nature. 2009. PMID: 19412164 Free PMC article.

7

Genome-wide identification of post-translational modulators of transcription factor activity in human B cells.

Wang K, Saito M, Bisikirska BC, Alvarez MJ, Lim WK, Rajbhandari P, Shen Q, Nemenman I, Basso K, Margolin AA, Klein U, Dalla-Favera R, Califano A. Wang K, et al. Among authors: califano a. Nat Biotechnol. 2009 Sep;27(9):829-39. doi: 10.1038/nbt.1563. Epub 2009 Sep 9. Nat Biotechnol. 2009. PMID: 19741643 Free PMC article.

8

Integrated biochemical and computational approach identifies BCL6 direct target genes controlling multiple pathways in normal germinal center B cells.

Basso K, Saito M, Sumazin P, Margolin AA, Wang K, Lim WK, Kitagawa Y, Schneider C, Alvarez MJ, Califano A, Dalla-Favera R. Basso K, et al. Among authors: califano a. Blood. 2010 Feb 4;115(5):975-84. doi: 10.1182/blood-2009-06-227017. Epub 2009 Dec 3. Blood. 2010. PMID: 19965633 Free PMC article.

9

The transcriptional network for mesenchymal transformation of brain tumours.

Carro MS, Lim WK, Alvarez MJ, Bollo RJ, Zhao X, Snyder EY, Sulman EP, Anne SL, Doetsch F, Colman H, Lasorella A, Aldape K, Califano A, Iavarone A. Carro MS, et al. Among authors: califano a. Nature. 2010 Jan 21;463(7279):318-25. doi: 10.1038/nature08712. Epub 2009 Dec 23. Nature. 2010. PMID: 20032975 Free PMC article.

10

Correlating measurements across samples improves accuracy of large-scale expression profile experiments.

Alvarez MJ, Sumazin P, Rajbhandari P, Califano A. Alvarez MJ, et al. Among authors: califano a. Genome Biol. 2009;10(12):R143. doi: 10.1186/gb-2009-10-12-r143. Epub 2009 Dec 30. Genome Biol. 2009. PMID: 20042104 Free PMC article.

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