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Personalized Metabolic Analysis of Diseases.
Cakmak A, Celik MH. Cakmak A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2021 May-Jun;18(3):1014-1025. doi: 10.1109/TCBB.2020.3008196. Epub 2021 Jun 3. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 32750887
An online system for metabolic network analysis.
Cicek AE, Qi X, Cakmak A, Johnson SR, Han X, Alshalwi S, Ozsoyoglu ZM, Ozsoyoglu G. Cicek AE, et al. Among authors: cakmak a. Database (Oxford). 2014 Sep 29;2014:bau091. doi: 10.1093/database/bau091. Print 2014. Database (Oxford). 2014. PMID: 25267793 Free PMC article.
Mining biological networks for unknown pathways.
Cakmak A, Ozsoyoglu G. Cakmak A, et al. Bioinformatics. 2007 Oct 15;23(20):2775-83. doi: 10.1093/bioinformatics/btm409. Epub 2007 Aug 30. Bioinformatics. 2007. PMID: 17766269
PathCase: pathways database system.
Elliott B, Kirac M, Cakmak A, Yavas G, Mayes S, Cheng E, Wang Y, Gupta C, Ozsoyoglu G, Meral Ozsoyoglu Z. Elliott B, et al. Among authors: cakmak a. Bioinformatics. 2008 Nov 1;24(21):2526-33. doi: 10.1093/bioinformatics/btn459. Epub 2008 Aug 26. Bioinformatics. 2008. PMID: 18728044
Annotating genes using textual patterns.
Cakmak A, Ozsoyoglu G. Cakmak A, et al. Pac Symp Biocomput. 2007:221-32. Pac Symp Biocomput. 2007. PMID: 17990494 Free article.
PathCase-SB architecture and database design.
Cakmak A, Qi X, Coskun SA, Das M, Cheng E, Cicek AE, Lai N, Ozsoyoglu G, Ozsoyoglu ZM. Cakmak A, et al. BMC Syst Biol. 2011 Nov 9;5:188. doi: 10.1186/1752-0509-5-188. BMC Syst Biol. 2011. PMID: 22070889 Free PMC article.
268 results