Cai JJ - Search Results

1

scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data.

Osorio D, Zhong Y, Li G, Huang JZ, Cai JJ. Osorio D, et al. Among authors: cai jj. Patterns (N Y). 2020 Nov 5;1(9):100139. doi: 10.1016/j.patter.2020.100139. eCollection 2020 Dec 11. Patterns (N Y). 2020. PMID: 33336197 Free PMC article.

2

Single-cell RNA sequencing of a European and an African lymphoblastoid cell line.

Osorio D, Yu X, Yu P, Serpedin E, Cai JJ. Osorio D, et al. Among authors: cai jj. Sci Data. 2019 Jul 4;6(1):112. doi: 10.1038/s41597-019-0116-4. Sci Data. 2019. PMID: 31273215 Free PMC article.

3

Single-Cell Expression Variability Implies Cell Function.

Osorio D, Yu X, Zhong Y, Li G, Yu P, Serpedin E, Huang JZ, Cai JJ. Osorio D, et al. Among authors: cai jj. Cells. 2019 Dec 19;9(1):14. doi: 10.3390/cells9010014. Cells. 2019. PMID: 31861624 Free PMC article.

4

Overdispersed gene expression in schizophrenia.

Huang G, Osorio D, Guan J, Ji G, Cai JJ. Huang G, et al. Among authors: cai jj. NPJ Schizophr. 2020 Apr 3;6(1):9. doi: 10.1038/s41537-020-0097-5. NPJ Schizophr. 2020. PMID: 32245959 Free PMC article.

5

Antecedent presentation of neurological phenotypes in the Collaborative Cross reveals four classes with complex sex-dependencies.

Eldridge R, Osorio D, Amstalden K, Edwards C, Young CR, Cai JJ, Konganti K, Hillhouse A, Threadgill DW, Welsh CJ, Brinkmeyer-Langford C. Eldridge R, et al. Among authors: cai jj. Sci Rep. 2020 May 13;10(1):7918. doi: 10.1038/s41598-020-64862-z. Sci Rep. 2020. PMID: 32404926 Free PMC article.

6

Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA-sequencing data quality control.

Osorio D, Cai JJ. Osorio D, et al. Among authors: cai jj. Bioinformatics. 2021 May 17;37(7):963-967. doi: 10.1093/bioinformatics/btaa751. Bioinformatics. 2021. PMID: 32840568 Free PMC article.

7

rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database.

Osorio D, Kuijjer ML, Cai JJ. Osorio D, et al. Among authors: cai jj. Bioinformatics. 2022 Jan 3;38(2):580-582. doi: 10.1093/bioinformatics/btab549. Bioinformatics. 2022. PMID: 34320637 Free PMC article.

8

Single-cell RNA Sequencing Reveals How the Aryl Hydrocarbon Receptor Shapes Cellular Differentiation Potency in the Mouse Colon.

Yang Y, Osorio D, Davidson LA, Han H, Mullens DA, Jayaraman A, Safe S, Ivanov I, Cai JJ, Chapkin RS. Yang Y, et al. Among authors: cai jj. Cancer Prev Res (Phila). 2022 Jan;15(1):17-28. doi: 10.1158/1940-6207.CAPR-21-0378. Epub 2021 Nov 22. Cancer Prev Res (Phila). 2022. PMID: 34815312 Free PMC article.

9

Gag-like proteins: Novel mediators of prenatal alcohol exposure in neural development.

Pinson MR, Chung DD, Mahnke AH, Salem NA, Osorio D, Nair V, Payne EA, Del Real JJ, Cai JJ, Miranda RC. Pinson MR, et al. Among authors: cai jj. Alcohol Clin Exp Res. 2022 Apr;46(4):556-569. doi: 10.1111/acer.14796. Epub 2022 Mar 2. Alcohol Clin Exp Res. 2022. PMID: 35187673 Free PMC article.

10

scInTime: A Computational Method Leveraging Single-Cell Trajectory and Gene Regulatory Networks to Identify Master Regulators of Cellular Differentiation.

Xu Q, Li G, Osorio D, Zhong Y, Yang Y, Lin YT, Zhang X, Cai JJ. Xu Q, et al. Among authors: cai jj. Genes (Basel). 2022 Feb 18;13(2):371. doi: 10.3390/genes13020371. Genes (Basel). 2022. PMID: 35205415 Free PMC article.

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