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The OGCleaner: filtering false-positive homology clusters.
Fujimoto MS, Suvorov A, Jensen NO, Clement MJ, Snell Q, Bybee SM. Fujimoto MS, et al. Among authors: bybee sm. Bioinformatics. 2017 Jan 1;33(1):125-127. doi: 10.1093/bioinformatics/btw571. Epub 2016 Sep 10. Bioinformatics. 2017. PMID: 27614349
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Speiser DI, et al. Among authors: bybee sm. BMC Bioinformatics. 2014 Nov 19;15(1):350. doi: 10.1186/s12859-014-0350-x. BMC Bioinformatics. 2014. PMID: 25407802 Free PMC article.
Odonata (dragonflies and damselflies) as a bridge between ecology and evolutionary genomics.
Bybee S, Córdoba-Aguilar A, Duryea MC, Futahashi R, Hansson B, Lorenzo-Carballa MO, Schilder R, Stoks R, Suvorov A, Svensson EI, Swaegers J, Takahashi Y, Watts PC, Wellenreuther M. Bybee S, et al. Front Zool. 2016 Oct 10;13:46. doi: 10.1186/s12983-016-0176-7. eCollection 2016. Front Zool. 2016. PMID: 27766110 Free PMC article. Review.
Firefly genomes illuminate parallel origins of bioluminescence in beetles.
Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, Nelson DR, Lewis SM, Shigenobu S, Bybee SM, Larracuente AM, Oba Y, Weng JK. Fallon TR, et al. Among authors: bybee sm. Elife. 2018 Oct 16;7:e36495. doi: 10.7554/eLife.36495. Elife. 2018. PMID: 30324905 Free PMC article.
39 results