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NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements.
Connor R, Brister R, Buchmann JP, Deboutte W, Edwards R, Martí-Carreras J, Tisza M, Zalunin V, Andrade-Martínez J, Cantu A, D'Amour M, Efremov A, Fleischmann L, Forero-Junco L, Garmaeva S, Giluso M, Glickman C, Henderson M, Kellman B, Kristensen D, Leubsdorf C, Levi K, Levi S, Pakala S, Peddu V, Ponsero A, Ribeiro E, Roy F, Rutter L, Saha S, Shakya M, Shean R, Miller M, Tully B, Turkington C, Youens-Clark K, Vanmechelen B, Busby B. Connor R, et al. Among authors: busby b. Genes (Basel). 2019 Sep 16;10(9):714. doi: 10.3390/genes10090714. Genes (Basel). 2019. PMID: 31527408 Free PMC article.
NCBI's Virus Discovery Codeathon: Building "FIVE" -The Federated Index of Viral Experiments API Index.
Martí-Carreras J, Gener AR, Miller SD, Brito AF, Camacho CE, Connor R, Deboutte W, Glickman C, Kristensen DM, Meyer WK, Modha S, Norris AL, Saha S, Belford AK, Biederstedt E, Brister JR, Buchmann JP, Cooley NP, Edwards RA, Javkar K, Muchow M, Muralidharan HS, Pepe-Ranney C, Shah N, Shakya M, Tisza MJ, Tully BJ, Vanmechelen B, Virta VC, Weissman JL, Zalunin V, Efremov A, Busby B. Martí-Carreras J, et al. Among authors: busby b. Viruses. 2020 Dec 10;12(12):1424. doi: 10.3390/v12121424. Viruses. 2020. PMID: 33322070 Free PMC article.
Managing Sequence Data.
O'Sullivan C, Busby B, Mizrachi IK. O'Sullivan C, et al. Among authors: busby b. Methods Mol Biol. 2017;1525:79-106. doi: 10.1007/978-1-4939-6622-6_4. Methods Mol Biol. 2017. PMID: 27896718
Magic-BLAST, an accurate RNA-seq aligner for long and short reads.
Boratyn GM, Thierry-Mieg J, Thierry-Mieg D, Busby B, Madden TL. Boratyn GM, et al. Among authors: busby b. BMC Bioinformatics. 2019 Jul 25;20(1):405. doi: 10.1186/s12859-019-2996-x. BMC Bioinformatics. 2019. PMID: 31345161 Free PMC article.
Viewing RNA-seq data on the entire human genome.
Weitz EM, Pantano L, Zhu J, Upton B, Busby B. Weitz EM, et al. Among authors: busby b. F1000Res. 2017 Apr 28;6:596. doi: 10.12688/f1000research.9762.1. eCollection 2017. F1000Res. 2017. PMID: 28979763 Free PMC article.
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
Walker K, Kalra D, Lowdon R, Chen G, Molik D, Soto DC, Dabbaghie F, Khleifat AA, Mahmoud M, Paulin LF, Raza MS, Pfeifer SP, Agustinho DP, Aliyev E, Avdeyev P, Barrozo ER, Behera S, Billingsley K, Chong LC, Choubey D, De Coster W, Fu Y, Gener AR, Hefferon T, Henke DM, Höps W, Illarionova A, Jochum MD, Jose M, Kesharwani RK, Kolora SRR, Kubica J, Lakra P, Lattimer D, Liew CS, Lo BW, Lo C, Lötter A, Majidian S, Mendem SK, Mondal R, Ohmiya H, Parvin N, Peralta C, Poon CL, Prabhakaran R, Saitou M, Sammi A, Sanio P, Sapoval N, Syed N, Treangen T, Wang G, Xu T, Yang J, Zhang S, Zhou W, Sedlazeck FJ, Busby B. Walker K, et al. Among authors: busby b. F1000Res. 2022 May 16;11:530. doi: 10.12688/f1000research.110194.1. eCollection 2022. F1000Res. 2022. PMID: 36262335 Free PMC article.
91 results