Busby B - Search Results

1

geneHummus: an R package to define gene families and their expression in legumes and beyond.

Die JV, Elmassry MM, LeBlanc KH, Awe OI, Dillman A, Busby B. Die JV, et al. Among authors: busby b. BMC Genomics. 2019 Jul 18;20(1):591. doi: 10.1186/s12864-019-5952-2. BMC Genomics. 2019. PMID: 31319791 Free PMC article.

2

Predicting drug-metagenome interactions: Variation in the microbial β-glucuronidase level in the human gut metagenomes.

Elmassry MM, Kim S, Busby B. Elmassry MM, et al. Among authors: busby b. PLoS One. 2021 Jan 7;16(1):e0244876. doi: 10.1371/journal.pone.0244876. eCollection 2021. PLoS One. 2021. PMID: 33411719 Free PMC article.

3

SeqAcademy: an educational pipeline for RNA-Seq and ChIP-Seq analysis.

Ather SH, Awe OI, Butler TJ, Denka T, Semick SA, Tang W, Busby B. Ather SH, et al. Among authors: busby b. F1000Res. 2018 May 22;7:ISCB Comm J-628. doi: 10.12688/f1000research.14880.4. eCollection 2018. F1000Res. 2018. PMID: 33014338 Free PMC article.

4

Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive.

Bernstein MN, Gladstein A, Latt KZ, Clough E, Busby B, Dillman A. Bernstein MN, et al. Among authors: busby b. F1000Res. 2020 May 19;9:376. doi: 10.12688/f1000research.23180.2. eCollection 2020. F1000Res. 2020. PMID: 32864105 Free PMC article.

5

Magic-BLAST, an accurate RNA-seq aligner for long and short reads.

Boratyn GM, Thierry-Mieg J, Thierry-Mieg D, Busby B, Madden TL. Boratyn GM, et al. Among authors: busby b. BMC Bioinformatics. 2019 Jul 25;20(1):405. doi: 10.1186/s12859-019-2996-x. BMC Bioinformatics. 2019. PMID: 31345161 Free PMC article.

6

Contribution of phage-derived genomic islands to the virulence of facultative bacterial pathogens.

Busby B, Kristensen DM, Koonin EV. Busby B, et al. Environ Microbiol. 2013 Feb;15(2):307-12. doi: 10.1111/j.1462-2920.2012.02886.x. Epub 2012 Oct 4. Environ Microbiol. 2013. PMID: 23035931 Free PMC article.

7

Mitogen-activated protein kinase signaling causes malignant melanoma cells to differentially alter extracellular matrix biosynthesis to promote cell survival.

Afasizheva A, Devine A, Tillman H, Fung KL, Vieira WD, Blehm BH, Kotobuki Y, Busby B, Chen EI, Tanner K. Afasizheva A, et al. Among authors: busby b. BMC Cancer. 2016 Mar 5;16:186. doi: 10.1186/s12885-016-2211-7. BMC Cancer. 2016. PMID: 26944546 Free PMC article.

8

Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows.

Madden TL, Busby B, Ye J. Madden TL, et al. Among authors: busby b. Bioinformatics. 2019 Aug 1;35(15):2699-2700. doi: 10.1093/bioinformatics/bty1026. Bioinformatics. 2019. PMID: 30590429 Free PMC article. No abstract available.

9

Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa).

Ohdera A, Ames CL, Dikow RB, Kayal E, Chiodin M, Busby B, La S, Pirro S, Collins AG, Medina M, Ryan JF. Ohdera A, et al. Among authors: busby b. Gigascience. 2019 Jul 1;8(7):giz069. doi: 10.1093/gigascience/giz069. Gigascience. 2019. PMID: 31257419 Free PMC article.

10

DangerTrack: A scoring system to detect difficult-to-assess regions.

Dolgalev I, Sedlazeck F, Busby B. Dolgalev I, et al. Among authors: busby b. F1000Res. 2017 Apr 7;6:443. doi: 10.12688/f1000research.11254.1. eCollection 2017. F1000Res. 2017. PMID: 28503299 Free PMC article.

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