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Biological network border detection.
Integr Biol (Camb). 2017 Dec 11;9(12):947-955. doi: 10.1039/c7ib00161d.
Integr Biol (Camb). 2017.
PMID: 29138780
A biochemical network modeling of a whole-cell.
Burke PEP, Campos CBL, Costa LDF, Quiles MG.
Burke PEP, et al.
Sci Rep. 2020 Aug 6;10(1):13303. doi: 10.1038/s41598-020-70145-4.
Sci Rep. 2020.
PMID: 32764598
Free PMC article.
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PhenoComb: a discovery tool to assess complex phenotypes in high-dimensional single-cell datasets.
Burke PEP, Strange A, Monk E, Thompson B, Amato CM, Woods DM.
Burke PEP, et al.
Bioinform Adv. 2022 Aug 3;2(1):vbac052. doi: 10.1093/bioadv/vbac052. eCollection 2022.
Bioinform Adv. 2022.
PMID: 36699375
Free PMC article.
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Toward Community Standards and Software for Whole-Cell Modeling.
Waltemath D, Karr JR, Bergmann FT, Chelliah V, Hucka M, Krantz M, Liebermeister W, Mendes P, Myers CJ, Pir P, Alaybeyoglu B, Aranganathan NK, Baghalian K, Bittig AT, Burke PE, Cantarelli M, Chew YH, Costa RS, Cursons J, Czauderna T, Goldberg AP, Gomez HF, Hahn J, Hameri T, Gardiol DF, Kazakiewicz D, Kiselev I, Knight-Schrijver V, Knupfer C, Konig M, Lee D, Lloret-Villas A, Mandrik N, Medley JK, Moreau B, Naderi-Meshkin H, Palaniappan SK, Priego-Espinosa D, Scharm M, Sharma M, Smallbone K, Stanford NJ, Song JH, Theile T, Tokic M, Tomar N, Toure V, Uhlendorf J, Varusai TM, Watanabe LH, Wendland F, Wolfien M, Yurkovich JT, Zhu Y, Zardilis A, Zhukova A, Schreiber F.
Waltemath D, et al.
IEEE Trans Biomed Eng. 2016 Oct;63(10):2007-14. doi: 10.1109/TBME.2016.2560762. Epub 2016 Jun 10.
IEEE Trans Biomed Eng. 2016.
PMID: 27305665
Free PMC article.
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