Bunnik EM - Search Results

1

Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages.

Bunnik EM, Cook KB, Varoquaux N, Batugedara G, Prudhomme J, Cort A, Shi L, Andolina C, Ross LS, Brady D, Fidock DA, Nosten F, Tewari R, Sinnis P, Ay F, Vert JP, Noble WS, Le Roch KG. Bunnik EM, et al. Nat Commun. 2018 May 15;9(1):1910. doi: 10.1038/s41467-018-04295-5. Nat Commun. 2018. PMID: 29765020 Free PMC article.

2

Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum.

Bunnik EM, Chung DW, Hamilton M, Ponts N, Saraf A, Prudhomme J, Florens L, Le Roch KG. Bunnik EM, et al. Genome Biol. 2013 Nov 22;14(11):R128. doi: 10.1186/gb-2013-14-11-r128. Genome Biol. 2013. PMID: 24267660 Free PMC article.

3

The multifunctional autophagy pathway in the human malaria parasite, Plasmodium falciparum.

Cervantes S, Bunnik EM, Saraf A, Conner CM, Escalante A, Sardiu ME, Ponts N, Prudhomme J, Florens L, Le Roch KG. Cervantes S, et al. Among authors: bunnik em. Autophagy. 2014 Jan;10(1):80-92. doi: 10.4161/auto.26743. Epub 2013 Nov 11. Autophagy. 2014. PMID: 24275162 Free PMC article.

4

Genome-wide mapping of DNA methylation in the human malaria parasite Plasmodium falciparum.

Ponts N, Fu L, Harris EY, Zhang J, Chung DW, Cervantes MC, Prudhomme J, Atanasova-Penichon V, Zehraoui E, Bunnik EM, Rodrigues EM, Lonardi S, Hicks GR, Wang Y, Le Roch KG. Ponts N, et al. Among authors: bunnik em. Cell Host Microbe. 2013 Dec 11;14(6):696-706. doi: 10.1016/j.chom.2013.11.007. Cell Host Microbe. 2013. PMID: 24331467 Free PMC article.

5

An Introduction to Functional Genomics and Systems Biology.

Bunnik EM, Le Roch KG. Bunnik EM, et al. Adv Wound Care (New Rochelle). 2013 Nov;2(9):490-498. doi: 10.1089/wound.2012.0379. Adv Wound Care (New Rochelle). 2013. PMID: 24527360 Free PMC article.

6

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression.

Ay F, Bunnik EM, Varoquaux N, Bol SM, Prudhomme J, Vert JP, Noble WS, Le Roch KG. Ay F, et al. Among authors: bunnik em. Genome Res. 2014 Jun;24(6):974-88. doi: 10.1101/gr.169417.113. Epub 2014 Mar 26. Genome Res. 2014. PMID: 24671853 Free PMC article.

7

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum.

Bunnik EM, Polishko A, Prudhomme J, Ponts N, Gill SS, Lonardi S, Le Roch KG. Bunnik EM, et al. BMC Genomics. 2014 May 8;15(1):347. doi: 10.1186/1471-2164-15-347. BMC Genomics. 2014. PMID: 24885191 Free PMC article.

8

PuFFIN--a parameter-free method to build nucleosome maps from paired-end reads.

Polishko A, Bunnik EM, Le Roch KG, Lonardi S. Polishko A, et al. Among authors: bunnik em. BMC Bioinformatics. 2014;15 Suppl 9(Suppl 9):S11. doi: 10.1186/1471-2105-15-S9-S11. Epub 2014 Sep 10. BMC Bioinformatics. 2014. PMID: 25252810 Free PMC article.

9

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum.

Ay F, Bunnik EM, Varoquaux N, Vert JP, Noble WS, Le Roch KG. Ay F, et al. Among authors: bunnik em. Bioessays. 2015 Feb;37(2):182-94. doi: 10.1002/bies.201400145. Epub 2014 Nov 13. Bioessays. 2015. PMID: 25394267 Free PMC article.

10

PfAlba1: master regulator of translation in the malaria parasite.

Bunnik EM, Le Roch KG. Bunnik EM, et al. Genome Biol. 2015 Oct 8;16:221. doi: 10.1186/s13059-015-0795-x. Genome Biol. 2015. PMID: 26450574 Free PMC article.

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