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22 results

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A scalable and modular automated pipeline for stitching of large electron microscopy datasets.
Mahalingam G, Torres R, Kapner D, Trautman ET, Fliss T, Seshamani S, Perlman E, Young R, Kinn S, Buchanan J, Takeno MM, Yin W, Bumbarger DJ, Gwinn RP, Nyhus J, Lein E, Smith SJ, Reid RC, Khairy KA, Saalfeld S, Collman F, Macarico da Costa N. Mahalingam G, et al. Among authors: bumbarger dj. Elife. 2022 Jul 26;11:e76534. doi: 10.7554/eLife.76534. Elife. 2022. PMID: 35880860 Free PMC article.
A petascale automated imaging pipeline for mapping neuronal circuits with high-throughput transmission electron microscopy.
Yin W, Brittain D, Borseth J, Scott ME, Williams D, Perkins J, Own CS, Murfitt M, Torres RM, Kapner D, Mahalingam G, Bleckert A, Castelli D, Reid D, Lee WA, Graham BJ, Takeno M, Bumbarger DJ, Farrell C, Reid RC, da Costa NM. Yin W, et al. Among authors: bumbarger dj. Nat Commun. 2020 Oct 2;11(1):4949. doi: 10.1038/s41467-020-18659-3. Nat Commun. 2020. PMID: 33009388 Free PMC article.
Structure and function of axo-axonic inhibition.
Schneider-Mizell CM, Bodor AL, Collman F, Brittain D, Bleckert A, Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Zhuang J, Nandi A, Hu B, Buchanan J, Takeno MM, Torres R, Mahalingam G, Bumbarger DJ, Li Y, Chartrand T, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A, Tartavull I, Popovych S, Wong W, Castro M, Jordan CS, Froudarakis E, Becker L, Suckow S, Reimer J, Tolias AS, Anastassiou CA, Seung HS, Reid RC, Costa NMD. Schneider-Mizell CM, et al. Among authors: bumbarger dj. Elife. 2021 Dec 1;10:e73783. doi: 10.7554/eLife.73783. Elife. 2021. PMID: 34851292 Free PMC article.
Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity.
Turner NL, Macrina T, Bae JA, Yang R, Wilson AM, Schneider-Mizell C, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Froudarakis E, Dorkenwald S, Collman F, Kemnitz N, Ih D, Silversmith WM, Zung J, Zlateski A, Tartavull I, Yu SC, Popovych S, Mu S, Wong W, Jordan CS, Castro M, Buchanan J, Bumbarger DJ, Takeno M, Torres R, Mahalingam G, Elabbady L, Li Y, Cobos E, Zhou P, Suckow S, Becker L, Paninski L, Polleux F, Reimer J, Tolias AS, Reid RC, da Costa NM, Seung HS. Turner NL, et al. Among authors: bumbarger dj. Cell. 2022 Mar 17;185(6):1082-1100.e24. doi: 10.1016/j.cell.2022.01.023. Epub 2022 Feb 24. Cell. 2022. PMID: 35216674 Free PMC article.
Nematode model systems in evolution and development.
Sommer RJ, Bumbarger DJ. Sommer RJ, et al. Among authors: bumbarger dj. Wiley Interdiscip Rev Dev Biol. 2012 May-Jun;1(3):389-400. doi: 10.1002/wdev.33. Epub 2012 Jan 27. Wiley Interdiscip Rev Dev Biol. 2012. PMID: 23801489 Review.
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