Bulyk ML - Search Results

1

Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos.

Gisselbrecht SS, Barrera LA, Porsch M, Aboukhalil A, Estep PW 3rd, Vedenko A, Palagi A, Kim Y, Zhu X, Busser BW, Gamble CE, Iagovitina A, Singhania A, Michelson AM, Bulyk ML. Gisselbrecht SS, et al. Among authors: bulyk ml. Nat Methods. 2013 Aug;10(8):774-80. doi: 10.1038/nmeth.2558. Epub 2013 Jul 14. Nat Methods. 2013. PMID: 23852450 Free PMC article.

2

Computational comparison of two draft sequences of the human genome.

Aach J, Bulyk ML, Church GM, Comander J, Derti A, Shendure J. Aach J, et al. Among authors: bulyk ml. Nature. 2001 Feb 15;409(6822):856-9. doi: 10.1038/35057055. Nature. 2001. PMID: 11237010

3

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

Mukherjee S, Berger MF, Jona G, Wang XS, Muzzey D, Snyder M, Young RA, Bulyk ML. Mukherjee S, et al. Among authors: bulyk ml. Nat Genet. 2004 Dec;36(12):1331-9. doi: 10.1038/ng1473. Epub 2004 Nov 14. Nat Genet. 2004. PMID: 15543148 Free PMC article.

4

Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data.

Huber BR, Bulyk ML. Huber BR, et al. Among authors: bulyk ml. BMC Bioinformatics. 2006 Apr 27;7:229. doi: 10.1186/1471-2105-7-229. BMC Bioinformatics. 2006. PMID: 16643658 Free PMC article.

5

Expression-guided in silico evaluation of candidate cis regulatory codes for Drosophila muscle founder cells.

Philippakis AA, Busser BW, Gisselbrecht SS, He FS, Estrada B, Michelson AM, Bulyk ML. Philippakis AA, et al. Among authors: bulyk ml. PLoS Comput Biol. 2006 May;2(5):e53. doi: 10.1371/journal.pcbi.0020053. Epub 2006 May 26. PLoS Comput Biol. 2006. PMID: 16733548 Free PMC article.

6

Biological code breaking in the 21st century.

Michelson AM, Bulyk ML. Michelson AM, et al. Among authors: bulyk ml. Mol Syst Biol. 2006;2:2006.0018. doi: 10.1038/msb4100062. Epub 2006 May 2. Mol Syst Biol. 2006. PMID: 16738563 Free PMC article. No abstract available.

7

Analysis of sequence specificities of DNA-binding proteins with protein binding microarrays.

Bulyk ML. Bulyk ML. Methods Enzymol. 2006;410:279-99. doi: 10.1016/S0076-6879(06)10013-0. Methods Enzymol. 2006. PMID: 16938556 Free PMC article. Review.

8

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.

Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW 3rd, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Biotechnol. 2006 Nov;24(11):1429-35. doi: 10.1038/nbt1246. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998473 Free PMC article.

9

Systematic identification of mammalian regulatory motifs' target genes and functions.

Warner JB, Philippakis AA, Jaeger SA, He FS, Lin J, Bulyk ML. Warner JB, et al. Among authors: bulyk ml. Nat Methods. 2008 Apr;5(4):347-53. doi: 10.1038/nmeth.1188. Epub 2008 Mar 2. Nat Methods. 2008. PMID: 18311145 Free PMC article.

10

Toward a systems-level understanding of developmental regulatory networks.

Busser BW, Bulyk ML, Michelson AM. Busser BW, et al. Among authors: bulyk ml. Curr Opin Genet Dev. 2008 Dec;18(6):521-9. doi: 10.1016/j.gde.2008.09.003. Epub 2008 Oct 9. Curr Opin Genet Dev. 2008. PMID: 18848887 Free PMC article. Review.

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