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Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.
Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium; Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD; MetaHIT Consortium. Nielsen HB, et al. Among authors: brunak s. Nat Biotechnol. 2014 Aug;32(8):822-8. doi: 10.1038/nbt.2939. Epub 2014 Jul 6. Nat Biotechnol. 2014. PMID: 24997787
Bias of purine stretches in sequenced chromosomes.
Ussery D, Soumpasis DM, Brunak S, Staerfeldt HH, Worning P, Krogh A. Ussery D, et al. Among authors: brunak s. Comput Chem. 2002 Jul;26(5):531-41. doi: 10.1016/s0097-8485(02)00013-x. Comput Chem. 2002. PMID: 12144181
Definition of supertypes for HLA molecules using clustering of specificity matrices.
Lund O, Nielsen M, Kesmir C, Petersen AG, Lundegaard C, Worning P, Sylvester-Hvid C, Lamberth K, Røder G, Justesen S, Buus S, Brunak S. Lund O, et al. Among authors: brunak s. Immunogenetics. 2004 Mar;55(12):797-810. doi: 10.1007/s00251-004-0647-4. Epub 2004 Feb 13. Immunogenetics. 2004. PMID: 14963618
Prediction of proprotein convertase cleavage sites.
Duckert P, Brunak S, Blom N. Duckert P, et al. Among authors: brunak s. Protein Eng Des Sel. 2004 Jan;17(1):107-12. doi: 10.1093/protein/gzh013. Protein Eng Des Sel. 2004. PMID: 14985543
Improved prediction of signal peptides: SignalP 3.0.
Bendtsen JD, Nielsen H, von Heijne G, Brunak S. Bendtsen JD, et al. Among authors: brunak s. J Mol Biol. 2004 Jul 16;340(4):783-95. doi: 10.1016/j.jmb.2004.05.028. J Mol Biol. 2004. PMID: 15223320
518 results