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Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.
Science. 2008 Feb 29;319(5867):1215-20. doi: 10.1126/science.1151721. Epub 2008 Jan 24.
Science. 2008.
PMID: 18218864
Novel computational methods for increasing PCR primer design effectiveness in directed sequencing.
Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, Busam D, Ferriera S, Murphy S, Levy S.
Li K, et al. Among authors: brownley a.
BMC Bioinformatics. 2008 Apr 11;9:191. doi: 10.1186/1471-2105-9-191.
BMC Bioinformatics. 2008.
PMID: 18405373
Free PMC article.
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Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing.
Li K, Shrivastava S, Brownley A, Katzel D, Bera J, Nguyen AT, Thovarai V, Halpin R, Stockwell TB.
Li K, et al. Among authors: brownley a.
Virol J. 2012 Nov 6;9:261. doi: 10.1186/1743-422X-9-261.
Virol J. 2012.
PMID: 23131097
Free PMC article.
Item in Clipboard
Aggressive assembly of pyrosequencing reads with mates.
Miller JR, Delcher AL, Koren S, Venter E, Walenz BP, Brownley A, Johnson J, Li K, Mobarry C, Sutton G.
Miller JR, et al. Among authors: brownley a.
Bioinformatics. 2008 Dec 15;24(24):2818-24. doi: 10.1093/bioinformatics/btn548. Epub 2008 Oct 24.
Bioinformatics. 2008.
PMID: 18952627
Free PMC article.
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Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.
Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen GB, Yeung G, Dahl F, Fernandez A, Staker B, Pant KP, Baccash J, Borcherding AP, Brownley A, Cedeno R, Chen L, Chernikoff D, Cheung A, Chirita R, Curson B, Ebert JC, Hacker CR, Hartlage R, Hauser B, Huang S, Jiang Y, Karpinchyk V, Koenig M, Kong C, Landers T, Le C, Liu J, McBride CE, Morenzoni M, Morey RE, Mutch K, Perazich H, Perry K, Peters BA, Peterson J, Pethiyagoda CL, Pothuraju K, Richter C, Rosenbaum AM, Roy S, Shafto J, Sharanhovich U, Shannon KW, Sheppy CG, Sun M, Thakuria JV, Tran A, Vu D, Zaranek AW, Wu X, Drmanac S, Oliphant AR, Banyai WC, Martin B, Ballinger DG, Church GM, Reid CA.
Drmanac R, et al. Among authors: brownley a.
Science. 2010 Jan 1;327(5961):78-81. doi: 10.1126/science.1181498. Epub 2009 Nov 5.
Science. 2010.
PMID: 19892942
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Primer design for RT-PCR.
Li K, Brownley A.
Li K, et al. Among authors: brownley a.
Methods Mol Biol. 2010;630:271-99. doi: 10.1007/978-1-60761-629-0_18.
Methods Mol Biol. 2010.
PMID: 20301004
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Computational techniques for human genome resequencing using mated gapped reads.
Carnevali P, Baccash J, Halpern AL, Nazarenko I, Nilsen GB, Pant KP, Ebert JC, Brownley A, Morenzoni M, Karpinchyk V, Martin B, Ballinger DG, Drmanac R.
Carnevali P, et al. Among authors: brownley a.
J Comput Biol. 2012 Mar;19(3):279-92. doi: 10.1089/cmb.2011.0201. Epub 2011 Dec 16.
J Comput Biol. 2012.
PMID: 22175250
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