Brooks B - Search Results

1

Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems.

Emerson JB, Adams RI, Román CMB, Brooks B, Coil DA, Dahlhausen K, Ganz HH, Hartmann EM, Hsu T, Justice NB, Paulino-Lima IG, Luongo JC, Lymperopoulou DS, Gomez-Silvan C, Rothschild-Mancinelli B, Balk M, Huttenhower C, Nocker A, Vaishampayan P, Rothschild LJ. Emerson JB, et al. Among authors: brooks b. Microbiome. 2017 Aug 16;5(1):86. doi: 10.1186/s40168-017-0285-3. Microbiome. 2017. PMID: 28810907 Free PMC article. Review.

2

Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.

Olm MR, West PT, Brooks B, Firek BA, Baker R, Morowitz MJ, Banfield JF. Olm MR, et al. Among authors: brooks b. Microbiome. 2019 Feb 15;7(1):26. doi: 10.1186/s40168-019-0638-1. Microbiome. 2019. PMID: 30770768 Free PMC article.

3

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.

Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF. Brooks B, et al. Microbiome. 2014 Jan 28;2(1):1. doi: 10.1186/2049-2618-2-1. Microbiome. 2014. PMID: 24468033 Free PMC article.

4

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.

Brooks B, Olm MR, Firek BA, Baker R, Geller-McGrath D, Reimer SR, Soenjoyo KR, Yip JS, Dahan D, Thomas BC, Morowitz MJ, Banfield JF. Brooks B, et al. Microbiome. 2018 Jun 20;6(1):112. doi: 10.1186/s40168-018-0493-5. Microbiome. 2018. PMID: 29925423 Free PMC article.

5

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication.

Olm MR, Brown CT, Brooks B, Banfield JF. Olm MR, et al. Among authors: brooks b. ISME J. 2017 Dec;11(12):2864-2868. doi: 10.1038/ismej.2017.126. Epub 2017 Jul 25. ISME J. 2017. PMID: 28742071 Free PMC article.

6

Clades of huge phages from across Earth's ecosystems.

Al-Shayeb B, Sachdeva R, Chen LX, Ward F, Munk P, Devoto A, Castelle CJ, Olm MR, Bouma-Gregson K, Amano Y, He C, Méheust R, Brooks B, Thomas A, Lavy A, Matheus-Carnevali P, Sun C, Goltsman DSA, Borton MA, Sharrar A, Jaffe AL, Nelson TC, Kantor R, Keren R, Lane KR, Farag IF, Lei S, Finstad K, Amundson R, Anantharaman K, Zhou J, Probst AJ, Power ME, Tringe SG, Li WJ, Wrighton K, Harrison S, Morowitz M, Relman DA, Doudna JA, Lehours AC, Warren L, Cate JHD, Santini JM, Banfield JF. Al-Shayeb B, et al. Among authors: brooks b. Nature. 2020 Feb;578(7795):425-431. doi: 10.1038/s41586-020-2007-4. Epub 2020 Feb 12. Nature. 2020. PMID: 32051592 Free PMC article.

7

Disturbances of the Perioperative Microbiome Across Multiple Body Sites in Patients Undergoing Pancreaticoduodenectomy.

Rogers MB, Aveson V, Firek B, Yeh A, Brooks B, Brower-Sinning R, Steve J, Banfield JF, Zureikat A, Hogg M, Boone BA, Zeh HJ, Morowitz MJ. Rogers MB, et al. Among authors: brooks b. Pancreas. 2017 Feb;46(2):260-267. doi: 10.1097/MPA.0000000000000726. Pancreas. 2017. PMID: 27846140 Free PMC article.

8

Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development.

Raveh-Sadka T, Thomas BC, Singh A, Firek B, Brooks B, Castelle CJ, Sharon I, Baker R, Good M, Morowitz MJ, Banfield JF. Raveh-Sadka T, et al. Among authors: brooks b. Elife. 2015 Mar 3;4:e05477. doi: 10.7554/eLife.05477. Elife. 2015. PMID: 25735037 Free PMC article.

9

Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant.

Brooks B, Mueller RS, Young JC, Morowitz MJ, Hettich RL, Banfield JF. Brooks B, et al. Front Microbiol. 2015 Jul 1;6:654. doi: 10.3389/fmicb.2015.00654. eCollection 2015. Front Microbiol. 2015. PMID: 26191049 Free PMC article.

10

Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.

Olm MR, Brown CT, Brooks B, Firek B, Baker R, Burstein D, Soenjoyo K, Thomas BC, Morowitz M, Banfield JF. Olm MR, et al. Among authors: brooks b. Genome Res. 2017 Apr;27(4):601-612. doi: 10.1101/gr.213256.116. Epub 2017 Jan 10. Genome Res. 2017. PMID: 28073918 Free PMC article.

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