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A community-developed open-source computational ecosystem for big neuro data.
Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R Jr, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K, Bridgeford E, Kleissas DM, Tward DJ, Crow AK, Hsueh B, Wright MA, Miller MI, Smith SJ, Vogelstein RJ, Deisseroth K, Burns R. Vogelstein JT, et al. Among authors: bridgeford e. Nat Methods. 2018 Nov;15(11):846-847. doi: 10.1038/s41592-018-0181-1. Nat Methods. 2018. PMID: 30377345 Free PMC article. No abstract available.
On a two-truths phenomenon in spectral graph clustering.
Priebe CE, Park Y, Vogelstein JT, Conroy JM, Lyzinski V, Tang M, Athreya A, Cape J, Bridgeford E. Priebe CE, et al. Among authors: bridgeford e. Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):5995-6000. doi: 10.1073/pnas.1814462116. Epub 2019 Mar 8. Proc Natl Acad Sci U S A. 2019. PMID: 30850525 Free PMC article.
Standardizing human brain parcellations.
Lawrence RM, Bridgeford EW, Myers PE, Arvapalli GC, Ramachandran SC, Pisner DA, Frank PF, Lemmer AD, Nikolaidis A, Vogelstein JT. Lawrence RM, et al. Among authors: bridgeford ew. Sci Data. 2021 Mar 8;8(1):78. doi: 10.1038/s41597-021-00849-3. Sci Data. 2021. PMID: 33686079 Free PMC article.
Supervised dimensionality reduction for big data.
Vogelstein JT, Bridgeford EW, Tang M, Zheng D, Douville C, Burns R, Maggioni M. Vogelstein JT, et al. Among authors: bridgeford ew. Nat Commun. 2021 May 17;12(1):2872. doi: 10.1038/s41467-021-23102-2. Nat Commun. 2021. PMID: 34001899 Free PMC article.
Eliminating accidental deviations to minimize generalization error and maximize replicability: Applications in connectomics and genomics.
Bridgeford EW, Wang S, Wang Z, Xu T, Craddock C, Dey J, Kiar G, Gray-Roncal W, Colantuoni C, Douville C, Noble S, Priebe CE, Caffo B, Milham M, Zuo XN; Consortium for Reliability and Reproducibility; Vogelstein JT. Bridgeford EW, et al. PLoS Comput Biol. 2021 Sep 16;17(9):e1009279. doi: 10.1371/journal.pcbi.1009279. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34529652 Free PMC article.
17 results