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Year Number of Results
2011 1
2012 4
2013 1
2014 1
2015 2
2016 2
2017 5
2018 3
2019 1
2020 8
2021 2
2022 3
2023 2
2024 1

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34 results

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Page 1
Training Infrastructure as a Service.
Rasche H, Hyde C, Davis J, Gladman S, Coraor N, Bretaudeau A, Cuccuru G, Bacon W, Serrano-Solano B, Hillman-Jackson J, Hiltemann S, Zhou M, Grüning B, Stubbs A. Rasche H, et al. Among authors: bretaudeau a. Gigascience. 2022 Dec 28;12:giad048. doi: 10.1093/gigascience/giad048. Epub 2023 Jul 3. Gigascience. 2022. PMID: 37395629 Free PMC article.
Galaxy Training: A powerful framework for teaching!
Hiltemann S, Rasche H, Gladman S, Hotz HR, Larivière D, Blankenberg D, Jagtap PD, Wollmann T, Bretaudeau A, Goué N, Griffin TJ, Royaux C, Le Bras Y, Mehta S, Syme A, Coppens F, Droesbeke B, Soranzo N, Bacon W, Psomopoulos F, Gallardo-Alba C, Davis J, Föll MC, Fahrner M, Doyle MA, Serrano-Solano B, Fouilloux AC, van Heusden P, Maier W, Clements D, Heyl F; Galaxy Training Network; Grüning B, Batut B. Hiltemann S, et al. Among authors: bretaudeau a. PLoS Comput Biol. 2023 Jan 9;19(1):e1010752. doi: 10.1371/journal.pcbi.1010752. eCollection 2023 Jan. PLoS Comput Biol. 2023. PMID: 36622853 Free PMC article.
Establishment and analysis of a reference transcriptome for Spodoptera frugiperda.
Legeai F, Gimenez S, Duvic B, Escoubas JM, Gosselin Grenet AS, Blanc F, Cousserans F, Séninet I, Bretaudeau A, Mutuel D, Girard PA, Monsempes C, Magdelenat G, Hilliou F, Feyereisen R, Ogliastro M, Volkoff AN, Jacquin-Joly E, d'Alençon E, Nègre N, Fournier P. Legeai F, et al. Among authors: bretaudeau a. BMC Genomics. 2014 Aug 23;15(1):704. doi: 10.1186/1471-2164-15-704. BMC Genomics. 2014. PMID: 25149648 Free PMC article.
Tools and data services registry: a community effort to document bioinformatics resources.
Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. Ison J, et al. Among authors: bretaudeau a. Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26538599 Free PMC article.
Community-Driven Data Analysis Training for Biology.
Batut B, Hiltemann S, Bagnacani A, Baker D, Bhardwaj V, Blank C, Bretaudeau A, Brillet-Guéguen L, Čech M, Chilton J, Clements D, Doppelt-Azeroual O, Erxleben A, Freeberg MA, Gladman S, Hoogstrate Y, Hotz HR, Houwaart T, Jagtap P, Larivière D, Le Corguillé G, Manke T, Mareuil F, Ramírez F, Ryan D, Sigloch FC, Soranzo N, Wolff J, Videm P, Wolfien M, Wubuli A, Yusuf D; Galaxy Training Network; Taylor J, Backofen R, Nekrutenko A, Grüning B. Batut B, et al. Among authors: bretaudeau a. Cell Syst. 2018 Jun 27;6(6):752-758.e1. doi: 10.1016/j.cels.2018.05.012. Cell Syst. 2018. PMID: 29953864 Free PMC article.
Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest.
Giordano R, Donthu RK, Zimin AV, Julca Chavez IC, Gabaldon T, van Munster M, Hon L, Hall R, Badger JH, Nguyen M, Flores A, Potter B, Giray T, Soto-Adames FN, Weber E, Marcelino JAP, Fields CJ, Voegtlin DJ, Hill CB, Hartman GL; Soybean aphid research community. Giordano R, et al. Insect Biochem Mol Biol. 2020 May;120:103334. doi: 10.1016/j.ibmb.2020.103334. Epub 2020 Feb 25. Insect Biochem Mol Biol. 2020. PMID: 32109587
PHYMYCO-DB: a curated database for analyses of fungal diversity and evolution.
Mahé S, Duhamel M, Le Calvez T, Guillot L, Sarbu L, Bretaudeau A, Collin O, Dufresne A, Kiers ET, Vandenkoornhuyse P. Mahé S, et al. Among authors: bretaudeau a. PLoS One. 2012;7(9):e43117. doi: 10.1371/journal.pone.0043117. Epub 2012 Sep 13. PLoS One. 2012. PMID: 23028445 Free PMC article.
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization.
Gauthier J, Boulain H, van Vugt JJFA, Baudry L, Persyn E, Aury JM, Noel B, Bretaudeau A, Legeai F, Warris S, Chebbi MA, Dubreuil G, Duvic B, Kremer N, Gayral P, Musset K, Josse T, Bigot D, Bressac C, Moreau S, Periquet G, Harry M, Montagné N, Boulogne I, Sabeti-Azad M, Maïbèche M, Chertemps T, Hilliou F, Siaussat D, Amselem J, Luyten I, Capdevielle-Dulac C, Labadie K, Merlin BL, Barbe V, de Boer JG, Marbouty M, Cônsoli FL, Dupas S, Hua-Van A, Le Goff G, Bézier A, Jacquin-Joly E, Whitfield JB, Vet LEM, Smid HM, Kaiser L, Koszul R, Huguet E, Herniou EA, Drezen JM. Gauthier J, et al. Among authors: bretaudeau a. Commun Biol. 2021 Jan 22;4(1):104. doi: 10.1038/s42003-020-01623-8. Commun Biol. 2021. PMID: 33483589 Free PMC article.
34 results