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Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress.
Mukherjee G, Abeygunawardena N, Parkinson H, Contrino S, Durinck S, Farne A, Holloway E, Lilja P, Moreau Y, Oezcimen A, Rayner T, Sharma A, Brazma A, Sarkans U, Shojatalab M. Mukherjee G, et al. Among authors: brazma a. Plant Physiol. 2005 Oct;139(2):632-6. doi: 10.1104/pp.105.063156. Plant Physiol. 2005. PMID: 16219923 Free PMC article.
One-stop shop for microarray data.
Brazma A, Robinson A, Cameron G, Ashburner M. Brazma A, et al. Nature. 2000 Feb 17;403(6771):699-700. doi: 10.1038/35001676. Nature. 2000. PMID: 10693778 No abstract available.
Gene expression data analysis.
Brazma A, Vilo J. Brazma A, et al. FEBS Lett. 2000 Aug 25;480(1):17-24. doi: 10.1016/s0014-5793(00)01772-5. FEBS Lett. 2000. PMID: 10967323 Free article. Review.
Gene expression data analysis.
Brazma A, Vilo J. Brazma A, et al. Microbes Infect. 2001 Aug;3(10):823-9. doi: 10.1016/s1286-4579(01)01440-x. Microbes Infect. 2001. PMID: 11580977 Free article. Review.
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. Brazma A, et al. Nat Genet. 2001 Dec;29(4):365-71. doi: 10.1038/ng1201-365. Nat Genet. 2001. PMID: 11726920
Design and implementation of microarray gene expression markup language (MAGE-ML).
Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A. Spellman PT, et al. Among authors: brazma a. Genome Biol. 2002 Aug 23;3(9):RESEARCH0046. doi: 10.1186/gb-2002-3-9-research0046. Epub 2002 Aug 23. Genome Biol. 2002. PMID: 12225585 Free PMC article.
Microarray data representation, annotation and storage.
Brazma A, Sarkans U, Robinson A, Vilo J, Vingron M, Hoheisel J, Fellenberg K. Brazma A, et al. Adv Biochem Eng Biotechnol. 2002;77:113-39. doi: 10.1007/3-540-45713-5_7. Adv Biochem Eng Biotechnol. 2002. PMID: 12227734
Standards for microarray data.
Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ Jr, Stewart JE, Taylor R, Brazma A, Quackenbush J; Microarray Gene Expression Data (MGED) Society. Ball CA, et al. Among authors: brazma a. Science. 2002 Oct 18;298(5593):539. doi: 10.1126/science.298.5593.539b. Science. 2002. PMID: 12387284 No abstract available.
The European Bioinformatics Institute's data resources.
Brooksbank C, Camon E, Harris MA, Magrane M, Martin MJ, Mulder N, O'Donovan C, Parkinson H, Tuli MA, Apweiler R, Birney E, Brazma A, Henrick K, Lopez R, Stoesser G, Stoehr P, Cameron G. Brooksbank C, et al. Among authors: brazma a. Nucleic Acids Res. 2003 Jan 1;31(1):43-50. doi: 10.1093/nar/gkg066. Nucleic Acids Res. 2003. PMID: 12519944 Free PMC article.
226 results