Brandt C - Search Results

1

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild AC, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki EP, O'Toole ÁN, Ontiveros-Palacios N, Petrov AI, Rangel-Pineros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M. Hufsky F, et al. Among authors: brandt c. Brief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232. Brief Bioinform. 2021. PMID: 33147627 Free PMC article. Review.

2

Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN).

Van Damme R, Hölzer M, Viehweger A, Müller B, Bongcam-Rudloff E, Brandt C. Van Damme R, et al. Among authors: brandt c. PLoS Comput Biol. 2021 Feb 9;17(2):e1008716. doi: 10.1371/journal.pcbi.1008716. eCollection 2021 Feb. PLoS Comput Biol. 2021. PMID: 33561126 Free PMC article.

3

poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing.

Brandt C, Krautwurst S, Spott R, Lohde M, Jundzill M, Marquet M, Hölzer M. Brandt C, et al. Front Genet. 2021 Jul 28;12:711437. doi: 10.3389/fgene.2021.711437. eCollection 2021. Front Genet. 2021. PMID: 34394197 Free PMC article.

4

Corrigendum: poreCov - An Easy to Use, Fast, and Robust Workflow for SARS CoV-2 Genome Reconstruction via Nanopore Sequencing.

Brandt C, Krautwurst S, Spott R, Lohde M, Jundzill M, Marquet M, Hölzer M. Brandt C, et al. Front Genet. 2022 Mar 14;13:875644. doi: 10.3389/fgene.2022.875644. eCollection 2022. Front Genet. 2022. PMID: 35368706 Free PMC article.

5

Near Chromosome-Level Genome Assembly and Annotation of Rhodotorula babjevae Strains Reveals High Intraspecific Divergence.

Martín-Hernández GC, Müller B, Brandt C, Hölzer M, Viehweger A, Passoth V. Martín-Hernández GC, et al. Among authors: brandt c. J Fungi (Basel). 2022 Mar 22;8(4):323. doi: 10.3390/jof8040323. J Fungi (Basel). 2022. PMID: 35448555 Free PMC article.

6

What the Phage: a scalable workflow for the identification and analysis of phage sequences.

Marquet M, Hölzer M, Pletz MW, Viehweger A, Makarewicz O, Ehricht R, Brandt C. Marquet M, et al. Among authors: brandt c. Gigascience. 2022 Nov 18;11:giac110. doi: 10.1093/gigascience/giac110. Gigascience. 2022. PMID: 36399058 Free PMC article.

7

Enhanced glycerol assimilation and lipid production in Rhodotorula toruloides CBS14 upon addition of hemicellulose primarily correlates with early transcription of energy-metabolism-related genes.

Martín-Hernández GC, Chmielarz M, Müller B, Brandt C, Viehweger A, Hölzer M, Passoth V. Martín-Hernández GC, et al. Among authors: brandt c. Biotechnol Biofuels Bioprod. 2023 Mar 10;16(1):42. doi: 10.1186/s13068-023-02294-3. Biotechnol Biofuels Bioprod. 2023. PMID: 36899390 Free PMC article.

8

Nanopore-based enrichment of antimicrobial resistance genes - a case-based study.

Viehweger A, Marquet M, Hölzer M, Dietze N, Pletz MW, Brandt C. Viehweger A, et al. Among authors: brandt c. GigaByte. 2023 Jan 25;2023:gigabyte75. doi: 10.46471/gigabyte.75. eCollection 2023. GigaByte. 2023. PMID: 36949817 Free PMC article.

9

Managing and monitoring a pandemic: showcasing a practical approach for the genomic surveillance of SARS-CoV-2.

Jundzill M, Spott R, Lohde M, Hölzer M, Viehweger A, Brandt C. Jundzill M, et al. Among authors: brandt c. Database (Oxford). 2023 Oct 16;2023:baad071. doi: 10.1093/database/baad071. Database (Oxford). 2023. PMID: 37847816 Free PMC article.

10

Chromosome-level genome assembly and transcriptome-based annotation of the oleaginous yeast Rhodotorula toruloides CBS 14.

Martín-Hernández GC, Müller B, Chmielarz M, Brandt C, Hölzer M, Viehweger A, Passoth V. Martín-Hernández GC, et al. Among authors: brandt c. Genomics. 2021 Nov;113(6):4022-4027. doi: 10.1016/j.ygeno.2021.10.006. Epub 2021 Oct 11. Genomics. 2021. PMID: 34648882 Free article.

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