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WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows.
Bouyssié D, Altıner P, Capella-Gutierrez S, Fernández JM, Hagemeijer YP, Horvatovich P, Hubálek M, Levander F, Mauri P, Palmblad M, Raffelsberger W, Rodríguez-Navas L, Di Silvestre D, Kunkli BT, Uszkoreit J, Vandenbrouck Y, Vizcaíno JA, Winkelhardt D, Schwämmle V. Bouyssié D, et al. J Proteome Res. 2024 Jan 5;23(1):418-429. doi: 10.1021/acs.jproteome.3c00636. Epub 2023 Dec 1. J Proteome Res. 2024. PMID: 38038272
A community proposal to integrate proteomics activities in ELIXIR.
Vizcaíno JA, Walzer M, Jiménez RC, Bittremieux W, Bouyssié D, Carapito C, Corrales F, Ferro M, Heck AJR, Horvatovich P, Hubalek M, Lane L, Laukens K, Levander F, Lisacek F, Novak P, Palmblad M, Piovesan D, Pühler A, Schwämmle V, Valkenborg D, van Rijswijk M, Vondrasek J, Eisenacher M, Martens L, Kohlbacher O. Vizcaíno JA, et al. Among authors: bouyssie d. F1000Res. 2017 Jun 13;6:ELIXIR-875. doi: 10.12688/f1000research.11751.1. eCollection 2017. F1000Res. 2017. PMID: 28713550 Free PMC article.
A proteomics sample metadata representation for multiomics integration and big data analysis.
Dai C, Füllgrabe A, Pfeuffer J, Solovyeva EM, Deng J, Moreno P, Kamatchinathan S, Kundu DJ, George N, Fexova S, Grüning B, Föll MC, Griss J, Vaudel M, Audain E, Locard-Paulet M, Turewicz M, Eisenacher M, Uszkoreit J, Van Den Bossche T, Schwämmle V, Webel H, Schulze S, Bouyssié D, Jayaram S, Duggineni VK, Samaras P, Wilhelm M, Choi M, Wang M, Kohlbacher O, Brazma A, Papatheodorou I, Bandeira N, Deutsch EW, Vizcaíno JA, Bai M, Sachsenberg T, Levitsky LI, Perez-Riverol Y. Dai C, et al. Among authors: bouyssie d. Nat Commun. 2021 Oct 6;12(1):5854. doi: 10.1038/s41467-021-26111-3. Nat Commun. 2021. PMID: 34615866 Free PMC article. Review.
Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.
Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssié D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y. Carapito C, et al. Among authors: bouyssie d. J Proteome Res. 2015 Sep 4;14(9):3621-34. doi: 10.1021/pr5010345. Epub 2015 Jul 22. J Proteome Res. 2015. PMID: 26132440
Proceedings of the EuBIC Winter School 2017.
Willems S, Bouyssié D, David M, Locard-Paulet M, Mechtler K, Schwämmle V, Uszkoreit J, Vaudel M, Dorfer V. Willems S, et al. Among authors: bouyssie d. J Proteomics. 2017 May 24;161:78-80. doi: 10.1016/j.jprot.2017.04.001. Epub 2017 Apr 4. J Proteomics. 2017. PMID: 28385664
Proceedings of the EuBIC Winter School 2019.
Kopczynski D, Bittremieux W, Bouyssié D, Dorfer V, Locard-Paulet M, Van Puyvelde B, Schwämmle V, Soggiu A, Willems S, Uszkoreit J. Kopczynski D, et al. Among authors: bouyssie d. EuPA Open Proteom. 2019 Aug 17;22-23:4-7. doi: 10.1016/j.euprot.2019.07.002. eCollection 2019 Mar. EuPA Open Proteom. 2019. PMID: 31890545 Free PMC article.
Proceedings of the EuBIC developer's meeting 2018.
Willems S, Bouyssié D, Deforce D, Dorfer V, Gorshkov V, Kopczynski D, Laukens K, Locard-Paulet M, Schwämmle V, Uszkoreit J, Valkenborg D, Vaudel M, Bittremieux W. Willems S, et al. Among authors: bouyssie d. J Proteomics. 2018 Sep 15;187:25-27. doi: 10.1016/j.jprot.2018.05.015. Epub 2018 Jun 2. J Proteomics. 2018. PMID: 29864591
32 results