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Proline: an efficient and user-friendly software suite for large-scale proteomics.
Bouyssié D, Hesse AM, Mouton-Barbosa E, Rompais M, Macron C, Carapito C, Gonzalez de Peredo A, Couté Y, Dupierris V, Burel A, Menetrey JP, Kalaitzakis A, Poisat J, Romdhani A, Burlet-Schiltz O, Cianférani S, Garin J, Bruley C. Bouyssié D, et al. Bioinformatics. 2020 May 1;36(10):3148-3155. doi: 10.1093/bioinformatics/btaa118. Bioinformatics. 2020. PMID: 32096818 Free PMC article.
Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.
Bouyssié D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard JP, Monsarrat B. Bouyssié D, et al. Mol Cell Proteomics. 2007 Sep;6(9):1621-37. doi: 10.1074/mcp.T600069-MCP200. Epub 2007 May 28. Mol Cell Proteomics. 2007. PMID: 17533220 Free article.
Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.
Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssié D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y. Carapito C, et al. Among authors: bouyssie d. J Proteome Res. 2015 Sep 4;14(9):3621-34. doi: 10.1021/pr5010345. Epub 2015 Jul 22. J Proteome Res. 2015. PMID: 26132440
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics.
Van Puyvelde B, Daled S, Willems S, Gabriels R, Gonzalez de Peredo A, Chaoui K, Mouton-Barbosa E, Bouyssié D, Boonen K, Hughes CJ, Gethings LA, Perez-Riverol Y, Bloomfield N, Tate S, Schiltz O, Martens L, Deforce D, Dhaenens M. Van Puyvelde B, et al. Among authors: bouyssie d. Sci Data. 2022 Mar 30;9(1):126. doi: 10.1038/s41597-022-01216-6. Sci Data. 2022. PMID: 35354825 Free PMC article.
32 results