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Bacteriocin production augments niche competition by enterococci in the mammalian gastrointestinal tract.
Nature. 2015 Oct 29;526(7575):719-22. doi: 10.1038/nature15524. Epub 2015 Oct 19.
Nature. 2015.
PMID: 26479034
Free PMC article.
Paneth cell defects in Crohn's disease patients promote dysbiosis.
Liu TC, Gurram B, Baldridge MT, Head R, Lam V, Luo C, Cao Y, Simpson P, Hayward M, Holtz ML, Bousounis P, Noe J, Lerner D, Cabrera J, Biank V, Stephens M, Huttenhower C, McGovern DP, Xavier RJ, Stappenbeck TS, Salzman NH.
Liu TC, et al. Among authors: bousounis p.
JCI Insight. 2016 Jun 2;1(8):e86907. doi: 10.1172/jci.insight.86907.
JCI Insight. 2016.
PMID: 27699268
Free PMC article.
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Estimating the Allele-Specific Expression of SNVs From 10× Genomics Single-Cell RNA-Sequencing Data.
M PN, Liu H, Bousounis P, Spurr L, Alomran N, Ibeawuchi H, Sein J, Reece-Stremtan D, Horvath A.
M PN, et al. Among authors: bousounis p.
Genes (Basel). 2020 Feb 25;11(3):240. doi: 10.3390/genes11030240.
Genes (Basel). 2020.
PMID: 32106453
Free PMC article.
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scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets.
Liu H, Prashant NM, Spurr LF, Bousounis P, Alomran N, Ibeawuchi H, Sein J, Słowiński P, Tsaneva-Atanasova K, Horvath A.
Liu H, et al. Among authors: bousounis p.
BMC Genomics. 2021 Jan 8;22(1):40. doi: 10.1186/s12864-020-07334-y.
BMC Genomics. 2021.
PMID: 33419390
Free PMC article.
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SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data.
Prashant NM, Alomran N, Chen Y, Liu H, Bousounis P, Movassagh M, Edwards N, Horvath A.
Prashant NM, et al. Among authors: bousounis p.
BMC Genomics. 2021 Sep 22;22(1):689. doi: 10.1186/s12864-021-07974-8.
BMC Genomics. 2021.
PMID: 34551708
Free PMC article.
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ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data.
Spurr LF, Alomran N, Bousounis P, Reece-Stremtan D, Prashant NM, Liu H, Słowiński P, Li M, Zhang Q, Sein J, Asher G, Crandall KA, Tsaneva-Atanasova K, Horvath A.
Spurr LF, et al. Among authors: bousounis p.
Bioinformatics. 2020 Mar 1;36(5):1351-1359. doi: 10.1093/bioinformatics/btz750.
Bioinformatics. 2020.
PMID: 31589315
Free PMC article.
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Inflammation, Aging and Hematopoiesis: A Complex Relationship.
Bousounis P, Bergo V, Trompouki E.
Bousounis P, et al.
Cells. 2021 Jun 4;10(6):1386. doi: 10.3390/cells10061386.
Cells. 2021.
PMID: 34199874
Free PMC article.
Review.
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