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RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer J, Bussi G, Krepl M, Banáš P, Bottaro S, Cunha RA, Gil-Ley A, Pinamonti G, Poblete S, Jurečka P, Walter NG, Otyepka M. Šponer J, et al. Among authors: bottaro s. Chem Rev. 2018 Apr 25;118(8):4177-4338. doi: 10.1021/acs.chemrev.7b00427. Epub 2018 Jan 3. Chem Rev. 2018. PMID: 29297679 Free PMC article. Review.
Accurate multiple time step in biased molecular simulations.
Ferrarotti MJ, Bottaro S, Pérez-Villa A, Bussi G. Ferrarotti MJ, et al. Among authors: bottaro s. J Chem Theory Comput. 2015 Jan 13;11(1):139-46. doi: 10.1021/ct5007086. Epub 2014 Dec 23. J Chem Theory Comput. 2015. PMID: 26574212
RNA folding pathways in stop motion.
Bottaro S, Gil-Ley A, Bussi G. Bottaro S, et al. Nucleic Acids Res. 2016 Jul 8;44(12):5883-91. doi: 10.1093/nar/gkw239. Epub 2016 Apr 18. Nucleic Acids Res. 2016. PMID: 27091499 Free PMC article.
Free Energy Landscape of GAGA and UUCG RNA Tetraloops.
Bottaro S, Banáš P, Šponer J, Bussi G. Bottaro S, et al. J Phys Chem Lett. 2016 Oct 20;7(20):4032-4038. doi: 10.1021/acs.jpclett.6b01905. Epub 2016 Sep 28. J Phys Chem Lett. 2016. PMID: 27661094
64 results