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Page 1
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.
Lovell JT, Bentley NB, Bhattarai G, Jenkins JW, Sreedasyam A, Alarcon Y, Bock C, Boston LB, Carlson J, Cervantes K, Clermont K, Duke S, Krom N, Kubenka K, Mamidi S, Mattison CP, Monteros MJ, Pisani C, Plott C, Rajasekar S, Rhein HS, Rohla C, Song M, Hilaire RS, Shu S, Wells L, Webber J, Heerema RJ, Klein PE, Conner P, Wang X, Grauke LJ, Grimwood J, Schmutz J, Randall JJ. Lovell JT, et al. Among authors: boston lb. Nat Commun. 2021 Jul 5;12(1):4125. doi: 10.1038/s41467-021-24328-w. Nat Commun. 2021. PMID: 34226565 Free PMC article.
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.
Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, Ewing A, Grabowski PP, Haque T, Harrison M, Jiang J, Kudrna D, Lipzen A, Pendergast TH 4th, Plott C, Qi P, Saski CA, Shakirov EV, Sims D, Sharma M, Sharma R, Stewart A, Singan VR, Tang Y, Thibivillier S, Webber J, Weng X, Williams M, Wu GA, Yoshinaga Y, Zane M, Zhang L, Zhang J, Behrman KD, Boe AR, Fay PA, Fritschi FB, Jastrow JD, Lloyd-Reilley J, Martínez-Reyna JM, Matamala R, Mitchell RB, Rouquette FM Jr, Ronald P, Saha M, Tobias CM, Udvardi M, Wing RA, Wu Y, Bartley LE, Casler M, Devos KM, Lowry DB, Rokhsar DS, Grimwood J, Juenger TE, Schmutz J. Lovell JT, et al. Nature. 2021 Feb;590(7846):438-444. doi: 10.1038/s41586-020-03127-1. Epub 2021 Jan 27. Nature. 2021. PMID: 33505029 Free PMC article.
Long-read genome sequencing for the molecular diagnosis of neurodevelopmental disorders.
Hiatt SM, Lawlor JMJ, Handley LH, Ramaker RC, Rogers BB, Partridge EC, Boston LB, Williams M, Plott CB, Jenkins J, Gray DE, Holt JM, Bowling KM, Bebin EM, Grimwood J, Schmutz J, Cooper GM. Hiatt SM, et al. Among authors: boston lb. HGG Adv. 2021 Apr 8;2(2):100023. doi: 10.1016/j.xhgg.2021.100023. Epub 2021 Jan 16. HGG Adv. 2021. PMID: 33937879 Free PMC article.
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics.
Healey AL, Piatkowski B, Lovell JT, Sreedasyam A, Carey SB, Mamidi S, Shu S, Plott C, Jenkins J, Lawrence T, Aguero B, Carrell AA, Nieto-Lugilde M, Talag J, Duffy A, Jawdy S, Carter KR, Boston LB, Jones T, Jaramillo-Chico J, Harkess A, Barry K, Keymanesh K, Bauer D, Grimwood J, Gunter L, Schmutz J, Weston DJ, Shaw AJ. Healey AL, et al. Among authors: boston lb. Nat Plants. 2023 Feb;9(2):238-254. doi: 10.1038/s41477-022-01333-5. Epub 2023 Feb 6. Nat Plants. 2023. PMID: 36747050 Free PMC article.
A chromosome-scale assembly for 'd'Anjou' pear.
Yocca A, Akinyuwa M, Bailey N, Cliver B, Estes H, Guillemette A, Hasannin O, Hutchison J, Jenkins W, Kaur I, Khanna RR, Loftin M, Lopes L, Moore-Pollard E, Olofintila O, Oyebode GO, Patel J, Thapa P, Waldinger M, Zhang J, Zhang Q, Goertzen L, Carey SB, Hargarten H, Mattheis J, Zhang H, Jones T, Boston L, Grimwood J, Ficklin S, Honaas L, Harkess A. Yocca A, et al. G3 (Bethesda). 2024 Mar 6;14(3):jkae003. doi: 10.1093/g3journal/jkae003. G3 (Bethesda). 2024. PMID: 38190814 Free PMC article.
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment.
Ma X, Vanneste S, Chang J, Ambrosino L, Barry K, Bayer T, Bobrov AA, Boston L, Campbell JE, Chen H, Chiusano ML, Dattolo E, Grimwood J, He G, Jenkins J, Khachaturyan M, Marín-Guirao L, Mesterházy A, Muhd DD, Pazzaglia J, Plott C, Rajasekar S, Rombauts S, Ruocco M, Scott A, Tan MP, Van de Velde J, Vanholme B, Webber J, Wong LL, Yan M, Sung YY, Novikova P, Schmutz J, Reusch TBH, Procaccini G, Olsen JL, Van de Peer Y. Ma X, et al. Nat Plants. 2024 Feb;10(2):240-255. doi: 10.1038/s41477-023-01608-5. Epub 2024 Jan 26. Nat Plants. 2024. PMID: 38278954
Long-read genome sequencing and variant reanalysis increase diagnostic yield in neurodevelopmental disorders.
Hiatt SM, Lawlor JMJ, Handley LH, Latner DR, Bonnstetter ZT, Finnila CR, Thompson ML, Boston LB, Williams M, Nunez IR, Jenkins J, Kelley WV, Bebin EM, Lopez MA, Hurst ACE, Korf BR, Schmutz J, Grimwood J, Cooper GM. Hiatt SM, et al. Among authors: boston lb. medRxiv [Preprint]. 2024 Mar 26:2024.03.22.24304633. doi: 10.1101/2024.03.22.24304633. medRxiv. 2024. PMID: 38585854 Free PMC article. Preprint.
The complex polyploid genome architecture of sugarcane.
Healey AL, Garsmeur O, Lovell JT, Shengquiang S, Sreedasyam A, Jenkins J, Plott CB, Piperidis N, Pompidor N, Llaca V, Metcalfe CJ, Doležel J, Cápal P, Carlson JW, Hoarau JY, Hervouet C, Zini C, Dievart A, Lipzen A, Williams M, Boston LB, Webber J, Keymanesh K, Tejomurthula S, Rajasekar S, Suchecki R, Furtado A, May G, Parakkal P, Simmons BA, Barry K, Henry RJ, Grimwood J, Aitken KS, Schmutz J, D'Hont A. Healey AL, et al. Among authors: boston lb. Nature. 2024 Apr;628(8009):804-810. doi: 10.1038/s41586-024-07231-4. Epub 2024 Mar 27. Nature. 2024. PMID: 38538783 Free PMC article.
The western redcedar genome reveals low genetic diversity in a self-compatible conifer.
Shalev TJ, Gamal El-Dien O, Yuen MMS, Shengqiang S, Jackman SD, Warren RL, Coombe L, van der Merwe L, Stewart A, Boston LB, Plott C, Jenkins J, He G, Yan J, Yan M, Guo J, Breinholt JW, Neves LG, Grimwood J, Rieseberg LH, Schmutz J, Birol I, Kirst M, Yanchuk AD, Ritland C, Russell JH, Bohlmann J. Shalev TJ, et al. Among authors: boston lb. Genome Res. 2022 Oct;32(10):1952-1964. doi: 10.1101/gr.276358.121. Epub 2022 Sep 15. Genome Res. 2022. PMID: 36109148 Free PMC article.
Long-read sequence assembly: a technical evaluation in barley.
Mascher M, Wicker T, Jenkins J, Plott C, Lux T, Koh CS, Ens J, Gundlach H, Boston LB, Tulpová Z, Holden S, Hernández-Pinzón I, Scholz U, Mayer KFX, Spannagl M, Pozniak CJ, Sharpe AG, Šimková H, Moscou MJ, Grimwood J, Schmutz J, Stein N. Mascher M, et al. Among authors: boston lb. Plant Cell. 2021 Jul 19;33(6):1888-1906. doi: 10.1093/plcell/koab077. Plant Cell. 2021. PMID: 33710295 Free PMC article.
12 results