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Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.
Ntini E, Järvelin AI, Bornholdt J, Chen Y, Boyd M, Jørgensen M, Andersson R, Hoof I, Schein A, Andersen PR, Andersen PK, Preker P, Valen E, Zhao X, Pelechano V, Steinmetz LM, Sandelin A, Jensen TH. Ntini E, et al. Among authors: bornholdt j. Nat Struct Mol Biol. 2013 Aug;20(8):923-8. doi: 10.1038/nsmb.2640. Epub 2013 Jul 14. Nat Struct Mol Biol. 2013. PMID: 23851456
An atlas of active enhancers across human cell types and tissues.
Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C, Suzuki T, Ntini E, Arner E, Valen E, Li K, Schwarzfischer L, Glatz D, Raithel J, Lilje B, Rapin N, Bagger FO, Jørgensen M, Andersen PR, Bertin N, Rackham O, Burroughs AM, Baillie JK, Ishizu Y, Shimizu Y, Furuhata E, Maeda S, Negishi Y, Mungall CJ, Meehan TF, Lassmann T, Itoh M, Kawaji H, Kondo N, Kawai J, Lennartsson A, Daub CO, Heutink P, Hume DA, Jensen TH, Suzuki H, Hayashizaki Y, Müller F, Forrest ARR, Carninci P, Rehli M, Sandelin A. Andersson R, et al. Among authors: bornholdt j. Nature. 2014 Mar 27;507(7493):455-461. doi: 10.1038/nature12787. Nature. 2014. PMID: 24670763 Free PMC article.
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase.
Ienasescu H, Li K, Andersson R, Vitezic M, Rennie S, Chen Y, Vitting-Seerup K, Lagoni E, Boyd M, Bornholdt J, de Hoon MJ, Kawaji H, Lassmann T; FANTOM Consortium; Hayashizaki Y, Forrest AR, Carninci P, Sandelin A. Ienasescu H, et al. Among authors: bornholdt j. Database (Oxford). 2016 Dec 26;2016:baw144. doi: 10.1093/database/baw144. Print 2016. Database (Oxford). 2016. PMID: 28025337 Free PMC article.
Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo.
Bornholdt J, Saber AT, Lilje B, Boyd M, Jørgensen M, Chen Y, Vitezic M, Jacobsen NR, Poulsen SS, Berthing T, Bressendorff S, Vitting-Seerup K, Andersson R, Hougaard KS, Yauk CL, Halappanavar S, Wallin H, Vogel U, Sandelin A. Bornholdt J, et al. ACS Nano. 2017 Apr 25;11(4):3597-3613. doi: 10.1021/acsnano.6b07533. Epub 2017 Mar 31. ACS Nano. 2017. PMID: 28345861
A new class of genic nuclear RNA species in Arabidopsis.
van Wonterghem M, Thieffry A, Boyd M, Bornholdt J, Brodersen P. van Wonterghem M, et al. Among authors: bornholdt j. FEBS Lett. 2018 Feb;592(4):631-643. doi: 10.1002/1873-3468.12981. Epub 2018 Feb 6. FEBS Lett. 2018. PMID: 29355922 Free article.
49 results