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Lower Airway Dysbiosis Affects Lung Cancer Progression.
Tsay JJ, Wu BG, Sulaiman I, Gershner K, Schluger R, Li Y, Yie TA, Meyn P, Olsen E, Perez L, Franca B, Carpenito J, Iizumi T, El-Ashmawy M, Badri M, Morton JT, Shen N, He L, Michaud G, Rafeq S, Bessich JL, Smith RL, Sauthoff H, Felner K, Pillai R, Zavitsanou AM, Koralov SB, Mezzano V, Loomis CA, Moreira AL, Moore W, Tsirigos A, Heguy A, Rom WN, Sterman DH, Pass HI, Clemente JC, Li H, Bonneau R, Wong KK, Papagiannakopoulos T, Segal LN. Tsay JJ, et al. Among authors: bonneau r. Cancer Discov. 2021 Feb;11(2):293-307. doi: 10.1158/2159-8290.CD-20-0263. Epub 2020 Nov 11. Cancer Discov. 2021. PMID: 33177060 Free PMC article.
Airway Microbiota Is Associated with Upregulation of the PI3K Pathway in Lung Cancer.
Tsay JJ, Wu BG, Badri MH, Clemente JC, Shen N, Meyn P, Li Y, Yie TA, Lhakhang T, Olsen E, Murthy V, Michaud G, Sulaiman I, Tsirigos A, Heguy A, Pass H, Weiden MD, Rom WN, Sterman DH, Bonneau R, Blaser MJ, Segal LN. Tsay JJ, et al. Among authors: bonneau r. Am J Respir Crit Care Med. 2018 Nov 1;198(9):1188-1198. doi: 10.1164/rccm.201710-2118OC. Am J Respir Crit Care Med. 2018. PMID: 29864375 Free PMC article.
Translating microbiome futures.
Taroncher-Oldenburg G, Jones S, Blaser M, Bonneau R, Christey P, Clemente JC, Elinav E, Ghedin E, Huttenhower C, Kelly D, Kyle D, Littman D, Maiti A, Maue A, Olle B, Segal L, van Hylckama Vlieg JET, Wang J. Taroncher-Oldenburg G, et al. Among authors: bonneau r. Nat Biotechnol. 2018 Nov 9;36(11):1037-1042. doi: 10.1038/nbt.4287. Nat Biotechnol. 2018. PMID: 30412201 No abstract available.
Interleukin-17 Inhibition in Spondyloarthritis Is Associated With Subclinical Gut Microbiome Perturbations and a Distinctive Interleukin-25-Driven Intestinal Inflammation.
Manasson J, Wallach DS, Guggino G, Stapylton M, Badri MH, Solomon G, Reddy SM, Coras R, Aksenov AA, Jones DR, Girija PV, Neimann AL, Heguy A, Segal LN, Dorrestein PC, Bonneau R, Guma M, Ciccia F, Ubeda C, Clemente JC, Scher JU. Manasson J, et al. Among authors: bonneau r. Arthritis Rheumatol. 2020 Apr;72(4):645-657. doi: 10.1002/art.41169. Epub 2020 Mar 12. Arthritis Rheumatol. 2020. PMID: 31729183 Free PMC article.
Initial Mapping of the New York City Wastewater Virome.
Gulino K, Rahman J, Badri M, Morton J, Bonneau R, Ghedin E. Gulino K, et al. Among authors: bonneau r. mSystems. 2020 Jun 16;5(3):e00876-19. doi: 10.1128/mSystems.00876-19. mSystems. 2020. PMID: 32546676 Free PMC article.
Protein remote homology detection and structural alignment using deep learning.
Hamamsy T, Morton JT, Blackwell R, Berenberg D, Carriero N, Gligorijevic V, Strauss CEM, Leman JK, Cho K, Bonneau R. Hamamsy T, et al. Among authors: bonneau r. Nat Biotechnol. 2023 Sep 7. doi: 10.1038/s41587-023-01917-2. Online ahead of print. Nat Biotechnol. 2023. PMID: 37679542
Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity.
Zhang XS, Li J, Krautkramer KA, Badri M, Battaglia T, Borbet TC, Koh H, Ng S, Sibley RA, Li Y, Pathmasiri W, Jindal S, Shields-Cutler RR, Hillmann B, Al-Ghalith GA, Ruiz VE, Livanos A, van 't Wout AB, Nagalingam N, Rogers AB, Sumner SJ, Knights D, Denu JM, Li H, Ruggles KV, Bonneau R, Williamson RA, Rauch M, Blaser MJ. Zhang XS, et al. Among authors: bonneau r. Elife. 2018 Jul 25;7:e37816. doi: 10.7554/eLife.37816. Elife. 2018. PMID: 30039798 Free PMC article.
322 results