Bonizzoni P - Search Results

1

μ- PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data.

Cozzi D, Rossi M, Rubinacci S, Gagie T, Köppl D, Boucher C, Bonizzoni P. Cozzi D, et al. Among authors: bonizzoni p. Bioinformatics. 2023 Sep 2;39(9):btad552. doi: 10.1093/bioinformatics/btad552. Bioinformatics. 2023. PMID: 37688560 Free PMC article.

2

Triplet-based similarity score for fully multilabeled trees with poly-occurring labels.

Ciccolella S, Bernardini G, Denti L, Bonizzoni P, Previtali M, Della Vedova G. Ciccolella S, et al. Among authors: bonizzoni p. Bioinformatics. 2021 Apr 19;37(2):178-184. doi: 10.1093/bioinformatics/btaa676. Bioinformatics. 2021. PMID: 32730595 Free PMC article.

3

Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.

Ciccolella S, Ricketts C, Soto Gomez M, Patterson M, Silverbush D, Bonizzoni P, Hajirasouliha I, Della Vedova G. Ciccolella S, et al. Among authors: bonizzoni p. Bioinformatics. 2021 Apr 20;37(3):326-333. doi: 10.1093/bioinformatics/btaa722. Bioinformatics. 2021. PMID: 32805010 Free PMC article.

4

Shark: fishing relevant reads in an RNA-Seq sample.

Denti L, Pirola Y, Previtali M, Ceccato T, Della Vedova G, Rizzi R, Bonizzoni P. Denti L, et al. Among authors: bonizzoni p. Bioinformatics. 2021 May 1;37(4):464-472. doi: 10.1093/bioinformatics/btaa779. Bioinformatics. 2021. PMID: 32926128 Free PMC article.

5

Finding Maximal Exact Matches Using the r-Index.

Rossi M, Oliva M, Bonizzoni P, Langmead B, Gagie T, Boucher C. Rossi M, et al. Among authors: bonizzoni p. J Comput Biol. 2022 Feb;29(2):188-194. doi: 10.1089/cmb.2021.0445. Epub 2022 Jan 17. J Comput Biol. 2022. PMID: 35041518 Free PMC article.

6

Computational graph pangenomics: a tutorial on data structures and their applications.

Baaijens JA, Bonizzoni P, Boucher C, Della Vedova G, Pirola Y, Rizzi R, Sirén J. Baaijens JA, et al. Among authors: bonizzoni p. Nat Comput. 2022 Mar;21(1):81-108. doi: 10.1007/s11047-022-09882-6. Epub 2022 Mar 4. Nat Comput. 2022. PMID: 36969737 Free PMC article.

7

RecGraph: recombination-aware alignment of sequences to variation graphs.

Avila Cartes J, Bonizzoni P, Ciccolella S, Della Vedova G, Denti L, Didelot X, Monti DC, Pirola Y. Avila Cartes J, et al. Among authors: bonizzoni p. Bioinformatics. 2024 May 2;40(5):btae292. doi: 10.1093/bioinformatics/btae292. Bioinformatics. 2024. PMID: 38676570

8

HapCol: accurate and memory-efficient haplotype assembly from long reads.

Pirola Y, Zaccaria S, Dondi R, Klau GW, Pisanti N, Bonizzoni P. Pirola Y, et al. Among authors: bonizzoni p. Bioinformatics. 2016 Jun 1;32(11):1610-7. doi: 10.1093/bioinformatics/btv495. Epub 2015 Aug 26. Bioinformatics. 2016. PMID: 26315913 Free article.

9

HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.

Beretta S, Patterson MD, Zaccaria S, Della Vedova G, Bonizzoni P. Beretta S, et al. Among authors: bonizzoni p. BMC Bioinformatics. 2018 Jul 3;19(1):252. doi: 10.1186/s12859-018-2253-8. BMC Bioinformatics. 2018. PMID: 29970002 Free PMC article.

10

γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites.

Calabria A, Beretta S, Merelli I, Spinozzi G, Brasca S, Pirola Y, Benedicenti F, Tenderini E, Bonizzoni P, Milanesi L, Montini E. Calabria A, et al. Among authors: bonizzoni p. Bioinformatics. 2020 Mar 1;36(5):1622-1624. doi: 10.1093/bioinformatics/btz747. Bioinformatics. 2020. PMID: 31589304 Free PMC article.

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