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SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Among authors: bolouri h. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Among authors: bolouri h. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808
Evolution of 'design' principles in biochemical networks.
de Atauri P, Orrell D, Ramsey S, Bolouri H. de Atauri P, et al. Among authors: bolouri h. Syst Biol (Stevenage). 2004 Jun;1(1):28-40. doi: 10.1049/sb:20045013. Syst Biol (Stevenage). 2004. PMID: 17052113
A data integration methodology for systems biology.
Hwang D, Rust AG, Ramsey S, Smith JJ, Leslie DM, Weston AD, de Atauri P, Aitchison JD, Hood L, Siegel AF, Bolouri H. Hwang D, et al. Among authors: bolouri h. Proc Natl Acad Sci U S A. 2005 Nov 29;102(48):17296-301. doi: 10.1073/pnas.0508647102. Epub 2005 Nov 21. Proc Natl Acad Sci U S A. 2005. PMID: 16301537 Free PMC article.
A data integration methodology for systems biology: experimental verification.
Hwang D, Smith JJ, Leslie DM, Weston AD, Rust AG, Ramsey S, de Atauri P, Siegel AF, Bolouri H, Aitchison JD, Hood L. Hwang D, et al. Among authors: bolouri h. Proc Natl Acad Sci U S A. 2005 Nov 29;102(48):17302-7. doi: 10.1073/pnas.0508649102. Epub 2005 Nov 21. Proc Natl Acad Sci U S A. 2005. PMID: 16301536 Free PMC article.
New computational approaches for analysis of cis-regulatory networks.
Brown CT, Rust AG, Clarke PJ, Pan Z, Schilstra MJ, De Buysscher T, Griffin G, Wold BJ, Cameron RA, Davidson EH, Bolouri H. Brown CT, et al. Among authors: bolouri h. Dev Biol. 2002 Jun 1;246(1):86-102. doi: 10.1006/dbio.2002.0619. Dev Biol. 2002. PMID: 12027436 Free article.
89 results