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VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2.
Goncharov M, Bagaev D, Shcherbinin D, Zvyagin I, Bolotin D, Thomas PG, Minervina AA, Pogorelyy MV, Ladell K, McLaren JE, Price DA, Nguyen THO, Rowntree LC, Clemens EB, Kedzierska K, Dolton G, Rius CR, Sewell A, Samir J, Luciani F, Zornikova KV, Khmelevskaya AA, Sheetikov SA, Efimov GA, Chudakov D, Shugay M. Goncharov M, et al. Among authors: bolotin d. Nat Methods. 2022 Sep;19(9):1017-1019. doi: 10.1038/s41592-022-01578-0. Nat Methods. 2022. PMID: 35970936 No abstract available.
Ultrasensitive allele inference from immune repertoire sequencing data with MiXCR.
Mikelov A, Nefediev G, Tashkeev A, Rodriguez OL, Ortmans DA, Skatova V, Izraelson M, Davydov A, Poslavsky S, Rahmouni S, Watson CT, Chudakov D, Boyd SD, Bolotin D. Mikelov A, et al. Among authors: bolotin d. bioRxiv [Preprint]. 2023 Nov 17:2023.10.10.561703. doi: 10.1101/2023.10.10.561703. bioRxiv. 2023. PMID: 38014266 Free PMC article. Preprint.
tcR: an R package for T cell receptor repertoire advanced data analysis.
Nazarov VI, Pogorelyy MV, Komech EA, Zvyagin IV, Bolotin DA, Shugay M, Chudakov DM, Lebedev YB, Mamedov IZ. Nazarov VI, et al. BMC Bioinformatics. 2015 May 28;16(1):175. doi: 10.1186/s12859-015-0613-1. BMC Bioinformatics. 2015. PMID: 26017500 Free PMC article.
Local fitness landscape of the green fluorescent protein.
Sarkisyan KS, Bolotin DA, Meer MV, Usmanova DR, Mishin AS, Sharonov GV, Ivankov DN, Bozhanova NG, Baranov MS, Soylemez O, Bogatyreva NS, Vlasov PK, Egorov ES, Logacheva MD, Kondrashov AS, Chudakov DM, Putintseva EV, Mamedov IZ, Tawfik DS, Lukyanov KA, Kondrashov FA. Sarkisyan KS, et al. Among authors: bolotin da. Nature. 2016 May 19;533(7603):397-401. doi: 10.1038/nature17995. Epub 2016 May 11. Nature. 2016. PMID: 27193686 Free PMC article.
Distinct organization of adaptive immunity in the long-lived rodent Spalax galili.
Izraelson M, Metsger M, Davydov AN, Shagina IA, Dronina MA, Obraztsova AS, Miskevich DA, Mamedov IZ, Volchkova LN, Nakonechnaya TO, Shugay M, Bolotin DA, Staroverov DB, Sharonov GV, Kondratyuk EY, Zagaynova EV, Lukyanov S, Shams I, Britanova OV, Chudakov DM. Izraelson M, et al. Among authors: bolotin da. Nat Aging. 2021 Feb;1(2):179-189. doi: 10.1038/s43587-021-00029-3. Epub 2021 Feb 8. Nat Aging. 2021. PMID: 37118630
Can we see PIP(3) and hydrogen peroxide with a single probe?
Mishina NM, Bogeski I, Bolotin DA, Hoth M, Niemeyer BA, Schultz C, Zagaynova EV, Lukyanov S, Belousov VV. Mishina NM, et al. Antioxid Redox Signal. 2012 Aug 1;17(3):505-12. doi: 10.1089/ars.2012.4574. Epub 2012 Apr 10. Antioxid Redox Signal. 2012. PMID: 22369174 Free article.
99 results