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The FAIR Guiding Principles for scientific data management and stewardship.
Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, Dumon O, Edmunds S, Evelo CT, Finkers R, Gonzalez-Beltran A, Gray AJ, Groth P, Goble C, Grethe JS, Heringa J, 't Hoen PA, Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL, Persson B, Rocca-Serra P, Roos M, van Schaik R, Sansone SA, Schultes E, Sengstag T, Slater T, Strawn G, Swertz MA, Thompson M, van der Lei J, van Mulligen E, Velterop J, Waagmeester A, Wittenburg P, Wolstencroft K, Zhao J, Mons B. Wilkinson MD, et al. Among authors: boiten jw. Sci Data. 2016 Mar 15;3:160018. doi: 10.1038/sdata.2016.18. Sci Data. 2016. PMID: 26978244 Free PMC article.
Addendum: The FAIR Guiding Principles for scientific data management and stewardship.
Wilkinson MD, Dumontier M, Jan Aalbersberg I, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, Dumon O, Edmunds S, Evelo CT, Finkers R, Gonzalez-Beltran A, Gray AJG, Groth P, Goble C, Grethe JS, Heringa J, Hoen PAC', Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL, Persson B, Rocca-Serra P, Roos M, van Schaik R, Sansone SA, Schultes E, Sengstag T, Slater T, Strawn G, Swertz MA, Thompson M, van der Lei J, van Mulligen E, Jan Velterop, Waagmeester A, Wittenburg P, Wolstencroft K, Zhao J, Mons B. Wilkinson MD, et al. Among authors: boiten jw. Sci Data. 2019 Mar 19;6(1):6. doi: 10.1038/s41597-019-0009-6. Sci Data. 2019. PMID: 30890711 Free PMC article. No abstract available.
FAIR in action - a flexible framework to guide FAIRification.
Welter D, Juty N, Rocca-Serra P, Xu F, Henderson D, Gu W, Strubel J, Giessmann RT, Emam I, Gadiya Y, Abbassi-Daloii T, Alharbi E, Gray AJG, Courtot M, Gribbon P, Ioannidis V, Reilly DS, Lynch N, Boiten JW, Satagopam V, Goble C, Sansone SA, Burdett T. Welter D, et al. Among authors: boiten jw. Sci Data. 2023 May 19;10(1):291. doi: 10.1038/s41597-023-02167-2. Sci Data. 2023. PMID: 37208349 Free PMC article.
Integration of EGA secure data access into Galaxy.
Hoogstrate Y, Zhang C, Senf A, Bijlard J, Hiltemann S, van Enckevort D, Repo S, Heringa J, Jenster G, J A Fijneman R, Boiten JW, A Meijer G, Stubbs A, Rambla J, Spalding D, Abeln S. Hoogstrate Y, et al. Among authors: boiten jw. F1000Res. 2016 Dec 12;5:ELIXIR-2841. doi: 10.12688/f1000research.10221.1. eCollection 2016. F1000Res. 2016. PMID: 28232859 Free PMC article.
Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data.
Zhang C, Bijlard J, Staiger C, Scollen S, van Enckevort D, Hoogstrate Y, Senf A, Hiltemann S, Repo S, Pipping W, Bierkens M, Payralbe S, Stringer B, Heringa J, Stubbs A, Bonino Da Silva Santos LO, Belien J, Weistra W, Azevedo R, van Bochove K, Meijer G, Boiten JW, Rambla J, Fijneman R, Spalding JD, Abeln S. Zhang C, et al. Among authors: boiten jw. F1000Res. 2017 Aug 16;6:ELIXIR-1488. doi: 10.12688/f1000research.12168.1. eCollection 2017. F1000Res. 2017. PMID: 29123641 Free PMC article.
"Be sustainable": EOSC-Life recommendations for implementation of FAIR principles in life science data handling.
David R, Rybina A, Burel JM, Heriche JK, Audergon P, Boiten JW, Coppens F, Crockett S, Exter K, Fahrner S, Fratelli M, Goble C, Gormanns P, Grantner T, Grüning B, Gurwitz KT, Hancock JM, Harmse H, Holub P, Juty N, Karnbach G, Karoune E, Keppler A, Klemeier J, Lancelotti C, Legras JL, Lister AL, Longo DL, Ludwig R, Madon B, Massimi M, Matser V, Matteoni R, Mayrhofer MT, Ohmann C, Panagiotopoulou M, Parkinson H, Perseil I, Pfander C, Pieruschka R, Raess M, Rauber A, Richard AS, Romano P, Rosato A, Sánchez-Pla A, Sansone SA, Sarkans U, Serrano-Solano B, Tang J, Tanoli Z, Tedds J, Wagener H, Weise M, Westerhoff HV, Wittner R, Ewbank J, Blomberg N, Gribbon P. David R, et al. Among authors: boiten jw. EMBO J. 2023 Dec 1;42(23):e115008. doi: 10.15252/embj.2023115008. Epub 2023 Nov 15. EMBO J. 2023. PMID: 37964598 Free PMC article.
An iterative and interdisciplinary categorisation process towards FAIRer digital resources for sensitive life-sciences data.
David R, Ohmann C, Boiten JW, Abadía MC, Bietrix F, Canham S, Chiusano ML, Dastrù W, Laroquette A, Longo D, Mayrhofer MT, Panagiotopoulou M, Richard AS, Goryanin S, Verde PE. David R, et al. Among authors: boiten jw. Sci Rep. 2022 Dec 5;12(1):20989. doi: 10.1038/s41598-022-25278-z. Sci Rep. 2022. PMID: 36470968 Free PMC article.
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