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Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept.
Bogaerts B, Winand R, Fu Q, Van Braekel J, Ceyssens PJ, Mattheus W, Bertrand S, De Keersmaecker SCJ, Roosens NHC, Vanneste K. Bogaerts B, et al. Front Microbiol. 2019 Mar 6;10:362. doi: 10.3389/fmicb.2019.00362. eCollection 2019. Front Microbiol. 2019. PMID: 30894839 Free PMC article.
TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION SEQUENCING TECHNOLOGIES.
Winand R, Bogaerts B, Hoffman S, Lefevre L, Delvoye M, Braekel JV, Fu Q, Roosens NH, Keersmaecker SC, Vanneste K. Winand R, et al. Among authors: bogaerts b. Int J Mol Sci. 2019 Dec 31;21(1):298. doi: 10.3390/ijms21010298. Int J Mol Sci. 2019. PMID: 31906254 Free PMC article.
First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin.
Yehouenou C, Bogaerts B, Vanneste K, Roosens NHC, De Keersmaecker SCJ, Marchal K, Affolabi D, Soleimani R, Rodriguez-Villalobos H, Van Bambeke F, Dalleur O, Simon A. Yehouenou C, et al. Among authors: bogaerts b. Ann Clin Microbiol Antimicrob. 2021 Jan 6;20(1):5. doi: 10.1186/s12941-020-00411-w. Ann Clin Microbiol Antimicrob. 2021. PMID: 33407536 Free PMC article.
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods.
Bogaerts B, Nouws S, Verhaegen B, Denayer S, Van Braekel J, Winand R, Fu Q, Crombé F, Piérard D, Marchal K, Roosens NHC, De Keersmaecker SCJ, Vanneste K. Bogaerts B, et al. Microb Genom. 2021 Mar;7(3):mgen000531. doi: 10.1099/mgen.0.000531. Epub 2021 Mar 3. Microb Genom. 2021. PMID: 33656437 Free PMC article.
30 results