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Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
QuagmiR: a cloud-based application for isomiR big data analytics.
Bofill-De Ros X, Chen K, Chen S, Tesic N, Randjelovic D, Skundric N, Nesic S, Varjacic V, Williams EH, Malhotra R, Jiang M, Gu S. Bofill-De Ros X, et al. Bioinformatics. 2019 May 1;35(9):1576-1578. doi: 10.1093/bioinformatics/bty843. Bioinformatics. 2019. PMID: 30295744 Free PMC article.
Recent progress in miRNA biogenesis and decay.
Bofill-De Ros X, Vang Ørom UA. Bofill-De Ros X, et al. RNA Biol. 2024 Jan;21(1):1-8. doi: 10.1080/15476286.2023.2288741. Epub 2023 Nov 29. RNA Biol. 2024. PMID: 38031325 Free PMC article. Review.
IsomiRs: Expanding the miRNA repression toolbox beyond the seed.
Bofill-De Ros X, Yang A, Gu S. Bofill-De Ros X, et al. Biochim Biophys Acta Gene Regul Mech. 2020 Apr;1863(4):194373. doi: 10.1016/j.bbagrm.2019.03.005. Epub 2019 Apr 4. Biochim Biophys Acta Gene Regul Mech. 2020. PMID: 30953728 Free PMC article. Review.
23 results