Blencowe BJ - Search Results

1

RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, Morris Q, Barash Y, Krainer AR, Jojic N, Scherer SW, Blencowe BJ, Frey BJ. Xiong HY, et al. Among authors: blencowe bj. Science. 2015 Jan 9;347(6218):1254806. doi: 10.1126/science.1254806. Epub 2014 Dec 18. Science. 2015. PMID: 25525159 Free PMC article.

2

Probing microRNAs with microarrays: tissue specificity and functional inference.

Babak T, Zhang W, Morris Q, Blencowe BJ, Hughes TR. Babak T, et al. Among authors: blencowe bj. RNA. 2004 Nov;10(11):1813-9. doi: 10.1261/rna.7119904. RNA. 2004. PMID: 15496526 Free PMC article.

3

The functional landscape of mouse gene expression.

Zhang W, Morris QD, Chang R, Shai O, Bakowski MA, Mitsakakis N, Mohammad N, Robinson MD, Zirngibl R, Somogyi E, Laurin N, Eftekharpour E, Sat E, Grigull J, Pan Q, Peng WT, Krogan N, Greenblatt J, Fehlings M, van der Kooy D, Aubin J, Bruneau BG, Rossant J, Blencowe BJ, Frey BJ, Hughes TR. Zhang W, et al. Among authors: blencowe bj. J Biol. 2004;3(5):21. doi: 10.1186/jbiol16. Epub 2004 Dec 6. J Biol. 2004. PMID: 15588312 Free PMC article.

4

Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform.

Pan Q, Shai O, Misquitta C, Zhang W, Saltzman AL, Mohammad N, Babak T, Siu H, Hughes TR, Morris QD, Frey BJ, Blencowe BJ. Pan Q, et al. Among authors: blencowe bj. Mol Cell. 2004 Dec 22;16(6):929-41. doi: 10.1016/j.molcel.2004.12.004. Mol Cell. 2004. PMID: 15610736 Free article.

5

Alternative splicing of conserved exons is frequently species-specific in human and mouse.

Pan Q, Bakowski MA, Morris Q, Zhang W, Frey BJ, Hughes TR, Blencowe BJ. Pan Q, et al. Among authors: blencowe bj. Trends Genet. 2005 Feb;21(2):73-7. doi: 10.1016/j.tig.2004.12.004. Trends Genet. 2005. PMID: 15661351

6

A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription.

Babak T, Blencowe BJ, Hughes TR. Babak T, et al. Among authors: blencowe bj. BMC Genomics. 2005 Aug 5;6:104. doi: 10.1186/1471-2164-6-104. BMC Genomics. 2005. PMID: 16083503 Free PMC article.

7

Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs.

Frey BJ, Mohammad N, Morris QD, Zhang W, Robinson MD, Mnaimneh S, Chang R, Pan Q, Sat E, Rossant J, Bruneau BG, Aubin JE, Blencowe BJ, Hughes TR. Frey BJ, et al. Among authors: blencowe bj. Nat Genet. 2005 Sep;37(9):991-6. doi: 10.1038/ng1630. Epub 2005 Aug 28. Nat Genet. 2005. PMID: 16127451

8

Inferring global levels of alternative splicing isoforms using a generative model of microarray data.

Shai O, Morris QD, Blencowe BJ, Frey BJ. Shai O, et al. Among authors: blencowe bj. Bioinformatics. 2006 Mar 1;22(5):606-13. doi: 10.1093/bioinformatics/btk028. Epub 2006 Jan 10. Bioinformatics. 2006. PMID: 16403798

9

Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression.

Pan Q, Saltzman AL, Kim YK, Misquitta C, Shai O, Maquat LE, Frey BJ, Blencowe BJ. Pan Q, et al. Among authors: blencowe bj. Genes Dev. 2006 Jan 15;20(2):153-8. doi: 10.1101/gad.1382806. Genes Dev. 2006. PMID: 16418482 Free PMC article.

10

Microarray analysis of RNA processing and modification.

Hughes TR, Hiley SL, Saltzman AL, Babak T, Blencowe BJ. Hughes TR, et al. Among authors: blencowe bj. Methods Enzymol. 2006;410:300-16. doi: 10.1016/S0076-6879(06)10014-2. Methods Enzymol. 2006. PMID: 16938557 Review.

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