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Breedbase: a digital ecosystem for modern plant breeding.
Morales N, Ogbonna AC, Ellerbrock BJ, Bauchet GJ, Tantikanjana T, Tecle IY, Powell AF, Lyon D, Menda N, Simoes CC, Saha S, Hosmani P, Flores M, Panitz N, Preble RS, Agbona A, Rabbi I, Kulakow P, Peteti P, Kawuki R, Esuma W, Kanaabi M, Chelangat DM, Uba E, Olojede A, Onyeka J, Shah T, Karanja M, Egesi C, Tufan H, Paterne A, Asfaw A, Jannink JL, Wolfe M, Birkett CL, Waring DJ, Hershberger JM, Gore MA, Robbins KR, Rife T, Courtney C, Poland J, Arnaud E, Laporte MA, Kulembeka H, Salum K, Mrema E, Brown A, Bayo S, Uwimana B, Akech V, Yencho C, de Boeck B, Campos H, Swennen R, Edwards JD, Mueller LA. Morales N, et al. Among authors: birkett cl. G3 (Bethesda). 2022 Jul 6;12(7):jkac078. doi: 10.1093/g3journal/jkac078. G3 (Bethesda). 2022. PMID: 35385099 Free PMC article.
BrAPI-an application programming interface for plant breeding applications.
Selby P, Abbeloos R, Backlund JE, Basterrechea Salido M, Bauchet G, Benites-Alfaro OE, Birkett C, Calaminos VC, Carceller P, Cornut G, Vasques Costa B, Edwards JD, Finkers R, Yanxin Gao S, Ghaffar M, Glaser P, Guignon V, Hok P, Kilian A, König P, Lagare JEB, Lange M, Laporte MA, Larmande P, LeBauer DS, Lyon DA, Marshall DS, Matthews D, Milne I, Mistry N, Morales N, Mueller LA, Neveu P, Papoutsoglou E, Pearce B, Perez-Masias I, Pommier C, Ramírez-González RH, Rathore A, Raquel AM, Raubach S, Rife T, Robbins K, Rouard M, Sarma C, Scholz U, Sempéré G, Shaw PD, Simon R, Soldevilla N, Stephen G, Sun Q, Tovar C, Uszynski G, Verouden M; BrAPI consortium. Selby P, et al. Bioinformatics. 2019 Oct 15;35(20):4147-4155. doi: 10.1093/bioinformatics/btz190. Bioinformatics. 2019. PMID: 30903186 Free PMC article.
GrainGenes: a data-rich repository for small grains genetics and genomics.
Yao E, Blake VC, Cooper L, Wight CP, Michel S, Cagirici HB, Lazo GR, Birkett CL, Waring DJ, Jannink JL, Holmes I, Waters AJ, Eickholt DP, Sen TZ. Yao E, et al. Among authors: birkett cl. Database (Oxford). 2022 May 25;2022:baac034. doi: 10.1093/database/baac034. Database (Oxford). 2022. PMID: 35616118 Free PMC article.
High-throughput gene discovery in the rat.
Scheetz TE, Laffin JJ, Berger B, Holte S, Baumes SA, Brown R 2nd, Chang S, Coco J, Conklin J, Crouch K, Donohue M, Doonan G, Estes C, Eyestone M, Fishler K, Gardiner J, Guo L, Johnson B, Keppel C, Kreger R, Lebeck M, Marcelino R, Miljkovich V, Perdue M, Qui L, Rehmann J, Reiter RS, Rhoads B, Schaefer K, Smith C, Sunjevaric I, Trout K, Wu N, Birkett CL, Bischof J, Gackle B, Gavin A, Grundstad AJ, Mokrzycki B, Moressi C, O'Leary B, Pedretti K, Roberts C, Robinson NL, Smith M, Tack D, Trivedi N, Kucaba T, Freeman T, Lin JJ, Bonaldo MF, Casavant TL, Sheffield VC, Soares MB. Scheetz TE, et al. Among authors: birkett cl. Genome Res. 2004 Apr;14(4):733-41. doi: 10.1101/gr.1414204. Genome Res. 2004. PMID: 15060017 Free PMC article.
ESTprep: preprocessing cDNA sequence reads.
Scheetz TE, Trivedi N, Roberts CA, Kucaba T, Berger B, Robinson NL, Birkett CL, Gavin AJ, O'Leary B, Braun TA, Bonaldo MF, Robinson JP, Sheffield VC, Soares MB, Casavant TL. Scheetz TE, et al. Among authors: birkett cl. Bioinformatics. 2003 Jul 22;19(11):1318-24. doi: 10.1093/bioinformatics/btg159. Bioinformatics. 2003. PMID: 12874042
14 results